HsaALTA0004366-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000143319 | ISG20L2
Description
interferon stimulated exonuclease gene 20 like 2 [Source:HGNC Symbol;Acc:HGNC:25745]
Coordinates
chr1:156727242-156728799:-
Coord C1 exon
chr1:156728415-156728799
Coord A exon
chr1:156727770-156727808
Coord C2 exon
chr1:156727242-156727769
Length
39 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TTACCTCATTTTTCTCCCAGGCC
3' ss Score
9.81
Exon sequences
Seq C1 exon
GCGGGCCAAGTTCCAGTTCCCGCCCCTTGCCGTACACTCCTCTCCTCTTACGGAAGTGAAGCCGGAGGTGTCCGGCGGGCTGCAGTTCCGGTTTATCGCGGCCTTCCCACACCTTCGCGTTGTACCACCACGGGGCTAGAGGGGCCGGGGAGCGCATCCCGCCCCCGCCCCCACCCACGCCGCCCCCTCCTCCGCCGCCACTGCCGCTCCTCACACACTCGGAATCACTGGCCTCACTACCTGGGGTCGGGGCGGTGCGGGTGTGCGCGCGCCGACCTCTGGCGCGTTCTAACCCGCGCGCCTGCCTTCCCGGGCTTCGTCGGCGCGCACCGATTTCCGCATCCGGCTCCGGACGCTTCCGGTCTTAGCTGGACCCGTCTGGGAG
Seq A exon
GCCTAGGAGCTCAATTACCAGGATCACTTTCTTCCCCAG
Seq C2 exon
GGTGTACTACAGACCTCCACATGTTGGACAGTAGGATTCAGCAGAGAATGAGTCCCACATCCTCTTTTCATCCATAAGCCACTCTTCCCAACTACTCTTCCGCCTTCCATTGTCCCTATGTCTACTTTACTGCTCAATCTGGATTTTGGGGAACCTCCTCCCAAAAAGGCATTAGAAGGAAATGCCAAGCACCGAAATTTTGTCAAGAAGCGGAGGCTCTTAGAACGGAGAGGCTTTCTGAGTAAAAAGAACCAACCCCCTAGCAAGGCGCCTAAGTTGCACTCTGAACCTTCAAAGAAAGGGGAAACTCCTACGGTCGATGGCACTTGGAAGACCCCTTCCTTCCCAAAAAAGAAGACAGCTGCTTCCAGCAATGGGTCAGGACAGCCCCTGGACAAGAAAGCTGCAGTGTCTTGGTTGACCCCTGCCCCTTCAAAAAAGGCTGATTCTGTTGCTGCTAAAGTAGATTTGCTGGGGGAGTTCCAGAGTGCCCTTCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143319-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.681
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(44.2=27.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAGCTGGACCCGTCTGG
R:
AGGCGGAAGAGTAGTTGGGAA
Band lengths:
128-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development