MmuALTA0009343-5/6 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000048039 | Isg20l2
Description
interferon stimulated exonuclease gene 20-like 2 [Source:MGI Symbol;Acc:MGI:2140076]
Coordinates
chr3:87930314-87932275:+
Coord C1 exon
chr3:87930314-87930611
Coord A exon
chr3:87931331-87931508
Coord C2 exon
chr3:87931509-87932275
Length
178 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CTGATCTTCTTTTCTCTCAGGCC
3' ss Score
10.26
Exon sequences
Seq C1 exon
GTTCCGCTTCCCGCGGCCCACCACCTTCGAGTTGTACCTCCACGGGGCCCGAGGGGCCGGGGAGCGCATCCCGCCCCCGCCCCCACCCACGCCGCCGCCGCCGCCACCGCCGTTCCCGCTGCTCACGCACTCCGAGTCGCTGGCCTCGCTGCCTGAGGTGGGGGCGCTGCGGGCGCGTGCGCGCCGGCCGCCTTCCCGTTGTCGCCCGCGTTCTTGCCGTCCCGGCATACGTCGGCGCGCGCCTGCGCCTGCATCCGGCTTCGGACGCTTGCGATCTTAGTGGGGAACCAACTTGGAG
Seq A exon
GCCTATGGTGCGGGAATCAGGATTACTTTGTCCCCAAGGCTGATTGCAGACCTCCACATGTTGAACTATGGGATTCCACAGAGGATGAGCCTCTCATCCTTTTGCTATCAGTGAGCCATTCTTCCCAGCTTCCTCCCACCATCCACTGATCTCATGTCTACCATACTCCTGAATTTAG
Seq C2 exon
ACTTTGGGCAACCTTCGAAAAAGGCATTTGGAGGAAATGCCAAACATCAACGCTTTGTCAAGAAGCGAAGGTTCTTGGAACAGAAAGGATTTCTGAATAAAAAGAACCAACCCCCTAACAAGGTGTCTAAGTTGAACTCAGAACCTCCAAAGAAAGGGGAAACTTCAAGAGTAGATGGCATTTTGAAGATCCTTCCATGCCCAAAGAAGAAAGAGGCAGCTGCCTCCAAGAGGGACTCAGAGCAGTCCAAAGACAAGAAAGCACCATTGTCTTGGCTGACCCCTGCTCCTTCAAAGAAGACTGCTTCTGTTGTGTCTAAAATAGATTTGCTAGGGGAGTTTCAGAGTGCCCTTCCAAAGACTAAGAGCACCCAGAAGAAGGGCTCCAAGAAGAAGTCCTTGAAAAAGAAAATTGCTACAGAGAACTCCACCCAAGCTCAGTCAAAGGATAAAGGCTCCAAGAAGAAGCCCTTGAAGAAAAATGCTGTACCGAACTCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048039-1-7,1-6,1-5,1-4,1-3,1-2-5/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.553
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(44.2=26.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGACGCTTGCGATCTTAG
R:
TGCCTCTTTCTTCTTTGGGCA
Band lengths:
257-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types