RnoALTA0019641-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011402 | Isg20l2
Description
interferon stimulated exonuclease gene 20-like 2 [Source:RGD Symbol;Acc:1359413]
Coordinates
chr2:187302608-187304117:+
Coord C1 exon
chr2:187302608-187302708
Coord A exon
chr2:187303169-187303280
Coord C2 exon
chr2:187303281-187304117
Length
112 bp
Sequences
Splice sites
5' ss Seq
TCAGTACGC
5' ss Score
2.84
3' ss Seq
TGGTCTTCTTTTTCTCTCAGGCC
3' ss Score
9.72
Exon sequences
Seq C1 exon
TTTGCTCTTCATTTTGTAGCACGTTGAGGATTCCTGGGTGATCCGGAGGACATCTCAGGACTGGCAAATGTTCTTAGAAGTTTCATTTCTCTGCTGTTTCA
Seq A exon
GCCTATGGTGCAAGTATCAGGATTACTTTTGCCCCCAAGGCTAATTGCAGATCTCCTCATGTTGAACTATGGGATTCCACAGAGAATGAGACTCTCATCCTTTTTCCATCAG
Seq C2 exon
TGAGCCACTCTTCCCAGCTTTCTCCCACCATCCACTGACCTCATGTCTACCATACTCCTGAATTTGGACTTTGGGGAACCTTCGAAAAAGGCATTTGGAGGAAATGCCAAACATCAACGTTTTGTCAAGAAGCGAAGGTTCTTGGAACAGAAAGGATTTCTGAGTAAAAAGAACCAACCCCCTAGCAAGGTGTCTAAATTAAACTCAGAACCTCCAAAGAAAGGGGAAACTTCAAGAGTAGATAGCATTTCGAAGATCCTTTCATGCCTAAAGAAGAAGAAAGAGGCAGCTGCCTCCAAGAGGGACTCAGAACAGTCCAAAGACAAGAAAGCATCATTGTCATGGCTGACCCCTGCTCCTTCAAAGAAGACTGATTCTGTTGTGGCTAAAATAGATTTGCTTGGGGAGTTTCAGAGTGCCCTTCCAAAGCCTAAGAGACGCACCCAGAAGAAGGGCTCTAAGAAGCCCTTGAAAAAGAAAATTGCTACAGAAAACTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011402-1-4,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.502
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(44.2=26.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACATCTCAGGACTGGCAA
R:
CCTTGCTAGGGGGTTGGTTCT
Band lengths:
245-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]