MmuALTA0009343-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000048039 | Isg20l2
Description
interferon stimulated exonuclease gene 20-like 2 [Source:MGI Symbol;Acc:MGI:2140076]
Coordinates
chr3:87734236-87736032:+
Coord C1 exon
chr3:87734236-87734533
Coord A exon
NA
Coord C2 exon
chr3:87735253-87736032
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CTGATCTTCTTTTCTCTCAGGCC
3' ss Score
10.26
Exon sequences
Seq C1 exon
GTTCCGCTTCCCGCGGCCCACCACCTTCGAGTTGTACCTCCACGGGGCCCGAGGGGCCGGGGAGCGCATCCCGCCCCCGCCCCCACCCACGCCGCCGCCGCCGCCACCGCCGTTCCCGCTGCTCACGCACTCCGAGTCGCTGGCCTCGCTGCCTGAGGTGGGGGCGCTGCGGGCGCGTGCGCGCCGGCCGCCTTCCCGTTGTCGCCCGCGTTCTTGCCGTCCCGGCATACGTCGGCGCGCGCCTGCGCCTGCATCCGGCTTCGGACGCTTGCGATCTTAGTGGGGAACCAACTTGGAG
Seq A exon
NA
Seq C2 exon
GCCTATGGTGCGGGAATCAGGATTACTTTGTCCCCAAGGCTGATTGCAGACCTCCACATGTTGAACTATGGGATTCCACAGAGGATGAGCCTCTCATCCTTTTGCTATCAGTGAGCCATTCTTCCCAGCTTCCTCCCACCATCCACTGATCTCATGTCTACCATACTCCTGAATTTAGACTTTGGGCAACCTTCGAAAAAGGCATTTGGAGGAAATGCCAAACATCAACGCTTTGTCAAGAAGCGAAGGTTCTTGGAACAGAAAGGATTTCTGAATAAAAAGAACCAACCCCCTAACAAGGTGTCTAAGTTGAACTCAGAACCTCCAAAGAAAGGGGAAACTTCAAGAGTAGATGGCATTTTGAAGATCCTTCCATGCCCAAAGAAGAAAGAGGCAGCTGCCTCCAAGAGGGACTCAGAGCAGTCCAAAGACAAGAAAGCACCATTGTCTTGGCTGACCCCTGCTCCTTCAAAGAAGACTGCTTCTGTTGTGTCTAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048039-1-3,1-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.553
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(44.2=26.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGACGCTTGCGATCTTAG
R:
GTTCAACATGTGGAGGTCTGCA
Band lengths:
105-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: