HsaALTD1052484-3/4 @ hg38
Alternative 5'ss
Gene
ENSG00000135870 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr1:173992755-174022362:-
Coord C1 exon
chr1:174022262-174022362
Coord A exon
chr1:174022096-174022261
Coord C2 exon
chr1:173992755-173993135
Length
166 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
TCCTTTTTCTTTATTTTCAGGTT
3' ss Score
12.67
Exon sequences
Seq C1 exon
ACGAGGACAACGAGCGACTGGGCGGCGGAGGACGAGGAGGAGGAAGAGGAGGCCGAGCAACAAGATGGCCCCTGCTGCAGGAGCAGCCTCAGCAGCAGCAG
Seq A exon
GTGGGAGGCCGGAGGCGGTGCTGGCGGTGGCGGCGGCAGCCGTGGCCCGGCGGCCTGGGACAGAATCAGAGTCAACGGTGGCCTCGGCGGCGGCGGCGGCTGCCGCGGCGGTGGCGACGGCCGCGGGGACTCGGAGCTGAGAGGAGCTGCTGCTCGGACCAGCGCG
Seq C2 exon
GTTATATTTCACACTATGTGCTGACTGTATCTACAGAAGATATTTAAAAAAAAAAAAGATAAACTTTTTTTCAAAGATTTTGATTCCAGTGGAATCTTTGCTTTAGATTTGTGTGTGTGTTTGTGTTCGTGAATTGTAACTCCAGAAGCAATGCCTGTACAAGCTCCACAATGGACGGATTTCCTCTCCTGCCCAATTTGCACTCAGACTTTCGACGAAACAATTCGAAAGCCCATCAGTTTGGGTTGTGGCCATACTGTCTGCAAGATGTGCCTGAATAAACTCCACCGCAAGGCTTGCCCATTTGACCAGACCACTATCAATACAGACATTGAGCTCCTCCCTGTGAACTCAGCATTGCTGCAGCTCGTGGGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135870-1-2,2-2,3-2,4-2-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF052906=Baculo_IE-1=WD(100=72.7),PF0136316=FYVE=WD(100=81.8),PF134451=zf-RING_UBOX=WD(100=57.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACGAGGAGGAGGAAGAG
R:
TGGAGCTTGTACAGGCATTGC
Band lengths:
242-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains