HsaALTD1053638-1/7 @ hg38
Alternative 5'ss
Gene
ENSG00000134215 | VAV3
Description
vav guanine nucleotide exchange factor 3 [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr1:107874901-107964766:-
Coord C1 exon
chr1:107964666-107964766
Coord A exon
NA
Coord C2 exon
chr1:107874901-107875017
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGCTCTTTTCCATTCCTCAGTTT
3' ss Score
6.82
Exon sequences
Seq C1 exon
AGACCCTCCGCGATGGAGTCCTGCTCTGCCAGCTGCTTAACAACCTCCGGGCGCACTCCATCAACCTGAAGGAGATCAACCTGAGGCCGCAGATGTCCCAG
Seq A exon
NA
Seq C2 exon
TTTCTCTGTTTGAAGAACATAAGGACATTTCTCACGGCCTGTTGTGAGACGTTTGGAATGAGGAAAAGTGAACTTTTCGAGGCATTTGACTTGTTTGATGTTCGTGACTTTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134215-0-3,1-3,2-3,3-3,4-3,5-3,6-3-1/7
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(58.1=73.5)
A:
NA
C2:
PF119713=CAMSAP_CH=PD(39.5=87.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGCTGCTTAACAACCTC
R:
TCAAACAAGTCAAATGCCTCGA
Band lengths:
173-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains