HsaALTD1053638-3/7 @ hg38
Alternative 5'ss
Gene
ENSG00000134215 | VAV3
Description
vav guanine nucleotide exchange factor 3 [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr1:107874901-107964766:-
Coord C1 exon
chr1:107964666-107964766
Coord A exon
chr1:107964446-107964665
Coord C2 exon
chr1:107874901-107875017
Length
220 bp
Sequences
Splice sites
5' ss Seq
ATGGTGTGA
5' ss Score
1.69
3' ss Seq
AGCTCTTTTCCATTCCTCAGTTT
3' ss Score
6.82
Exon sequences
Seq C1 exon
AGACCCTCCGCGATGGAGTCCTGCTCTGCCAGCTGCTTAACAACCTCCGGGCGCACTCCATCAACCTGAAGGAGATCAACCTGAGGCCGCAGATGTCCCAG
Seq A exon
GTGAGGAGGCCGGCACGGGCGCCCCGCCTCCAGCCGGCAGCTCCCATTAATCATGCGGCTAATTTCTTTGTGTAAATGCAAACGTCTAGGTGCGCTGAGCTTGCCCTGCTTCCCAGCCTTCTGCTTTGGGACCACTTCGGCACCACTTTGGCGTTTCCTACCTTGGCTTGAAATGGTTTAGCTCCTCAAGCTGAATGCGAAAGCTTTGCGTCCGGAGATG
Seq C2 exon
TTTCTCTGTTTGAAGAACATAAGGACATTTCTCACGGCCTGTTGTGAGACGTTTGGAATGAGGAAAAGTGAACTTTTCGAGGCATTTGACTTGTTTGATGTTCGTGACTTTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134215-0-3,1-3,2-3,3-3,4-3,5-3,6-3-3/7
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(58.1=73.5)
A:
NA
C2:
PF119713=CAMSAP_CH=PD(39.5=87.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCGATGGAGTCCTGC
R:
CTTTCCAAAGTCACGAACATCA
Band lengths:
212-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains