HsaALTD1053762-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000096654 | ZNF184
Description
zinc finger protein 184 [Source:HGNC Symbol;Acc:HGNC:12975]
Coordinates
chr6:27472288-27473073:-
Coord C1 exon
chr6:27472973-27473073
Coord A exon
chr6:27472729-27472972
Coord C2 exon
chr6:27472288-27472433
Length
244 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CGCCATCCTGTGTCTTTTAGGGT
3' ss Score
10.68
Exon sequences
Seq C1 exon
TCCAGTTGCTTCGGCTCCCTGCGTTAGGTCTGGTGGCGGTCAATGCGCTTCCGGACCCGGGATCAGAGTGTGTGGATCGCTATAGGGGGAGGGGAGCTCAG
Seq A exon
GTATCACCATGGCAACAGCCAGCCCTCCGGACTCGTGACGTCACCCTTCTGATTTCGCGCTTAGAGGCCTCTGCAGGAGAAAGCTGGGGAGTCCTCGAAGGGGGCGCACCTCGCCTCCTTCTGTGCGGGGCGGTCCCGCCCTGATCCCTTGGAGGGCTTTGTTCTTTTGTTCTGGCCTAAGGGGAAGTCGGGTGCCGGGCCCCGCCCTGTTTGTCCACCTTCCAGCTTTAACGCTCTGCAACAG
Seq C2 exon
GGTAGACAACCTCAGCGTGTTGCAGATTCCCTGCAAGGGGAGTTAGACATCTGAGTCCTAGACCGAGATACCAGCTGAAGGAACGCTGCCTGGCGAACCCTGGTGTTCAAGTTCCAGAGGAACGGGATGAGCTCCTGAGATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096654-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.583
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGCTTCGGCTCCCTG
R:
CTTCCATCTCAGGAGCTCATC
Band lengths:
245-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains