HsaINT0186342 @ hg38
Intron Retention
Gene
ENSG00000096654 | ZNF184
Description
zinc finger protein 184 [Source:HGNC Symbol;Acc:HGNC:12975]
Coordinates
chr6:27472288-27472681:-
Coord C1 exon
chr6:27472661-27472681
Coord A exon
chr6:27472434-27472660
Coord C2 exon
chr6:27472288-27472433
Length
227 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
CGCCATCCTGTGTCTTTTAGGGT
3' ss Score
10.68
Exon sequences
Seq C1 exon
TGCACAGAGGGAACACACCAG
Seq A exon
GTCTGTGGATGCCCCGGCCAGATTCTAGGGTGGGCACCAAGGGTTTTTTGGATCTGAAGCAGAACCCGCGTACCCGATCTCCACTCTGTTTTGTTCATCGGAGTGCCACACACCTCTCTAGTGCTCTCTTGGGGCACTTCTCTTGTGTAGCACCTCTTGGTCACTTTGCAAGACTCTGATGTGTGATTGTGTGACGTATGCTGCTGACGCCATCCTGTGTCTTTTAG
Seq C2 exon
GGTAGACAACCTCAGCGTGTTGCAGATTCCCTGCAAGGGGAGTTAGACATCTGAGTCCTAGACCGAGATACCAGCTGAAGGAACGCTGCCTGGCGAACCCTGGTGTTCAAGTTCCAGAGGAACGGGATGAGCTCCTGAGATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096654:ENST00000377419:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.583
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAGGGAACACACCAG
R:
CTTCCATCTCAGGAGCTCATC
Band lengths:
166-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains