BtaINT0164977 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011498 | ZNF184
Description
Bos taurus zinc finger protein 184 (ZNF184), mRNA. [Source:RefSeq mRNA;Acc:NM_001100372]
Coordinates
chr23:30960005-30960841:+
Coord C1 exon
chr23:30960005-30960040
Coord A exon
chr23:30960041-30960703
Coord C2 exon
chr23:30960704-30960841
Length
663 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
CCCCATCTTGTGTCTTTTAGGGC
3' ss Score
11.58
Exon sequences
Seq C1 exon
GAAACCGGCTGTAGGCATGAAAAGAGGTTGGCCGAG
Seq A exon
GTAAAAGTCCAGCTGCTTCGGCTCCCTTCGCTAGGTTTGGTGATTGACCCAGAGCTTCCAGACCCGGGATTGGAGTGTGAGAATCGCTCTAGAGGGAAGCCCAGGTATCACTATGGCAACCGGCAGCCCTCCGGCCGCGTGACGTCACCTCTCTCACTCTAGGCTGGGAGCGGCCTCTGAGGGAGGGAGCTGGGGAGTCCTCGAAGAGGGCGCCCCTCGCCTCTTTCAGTGTGGGGGCTGTTCCGCCCCGATCTCTGGGAGGGCTTTGTTCTTTTGTTCAGGCCTAGGAGGAAGGCCTAGAGCCGGGCCCCGCCCTGTTTGTCCACCTTCCAGCTTTTCTGCTCCGCAACAGGTGTGTCTTTTTGAGCCCGCGGGGGTGTGAGCCTGCAAGTGTGCACTGAGGTAACCGTTCGAGTAAATGGGCGCCTCTAGCCGGATTCTAGGGTAGGCGCCAGGGTTTGTTTTTTTTTTTTTTAAATCTGCGGCCAAACCTGTGTACTCGATCTCCATTCTGTTTTTGTTCGGCGGCGGGAGTGCCACTTGCCTCTTTAATGCTCTCTCTGGGCATTTCTCTTTTTCAAGGATCTCTTGACCACTGTGCAAAACTCTTTTAAGATGTGATTTTGTAACGGTTGCCGCTGACCCCCATCTTGTGTCTTTTAG
Seq C2 exon
GGCAACCAACTTCAGCGTGTATAAGGGTTCAGACTCCTGCTGGACATCTGGGCTCCAGAAAGAGGACCCAGATACGCTGCTTGGGAAACCCTGGTGTCCAGATTCCAAGAGGAACGAGATGTGCGCCTGAGATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011498:ENSBTAT00000015283:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.167
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]