HsaINT0186342 @ hg19
Intron Retention
Gene
ENSG00000096654 | ZNF184
Description
zinc finger protein 184 [Source:HGNC Symbol;Acc:12975]
Coordinates
chr6:27440067-27440897:-
Coord C1 exon
chr6:27440752-27440897
Coord A exon
chr6:27440213-27440751
Coord C2 exon
chr6:27440067-27440212
Length
539 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
CGCCATCCTGTGTCTTTTAGGGT
3' ss Score
10.68
Exon sequences
Seq C1 exon
GTTGAAGCCGGTTGTAGGCGTGGAAAGAGGTTGGCGCGCTGGAAGTCCAGTTGCTTCGGCTCCCTGCGTTAGGTCTGGTGGCGGTCAATGCGCTTCCGGACCCGGGATCAGAGTGTGTGGATCGCTATAGGGGGAGGGGAGCTCAG
Seq A exon
GTATCACCATGGCAACAGCCAGCCCTCCGGACTCGTGACGTCACCCTTCTGATTTCGCGCTTAGAGGCCTCTGCAGGAGAAAGCTGGGGAGTCCTCGAAGGGGGCGCACCTCGCCTCCTTCTGTGCGGGGCGGTCCCGCCCTGATCCCTTGGAGGGCTTTGTTCTTTTGTTCTGGCCTAAGGGGAAGTCGGGTGCCGGGCCCCGCCCTGTTTGTCCACCTTCCAGCTTTAACGCTCTGCAACAGGTGTGTCTTCGTGTTATCCGAGCTCGCAGGGGTGTGAGTCACAAGTGTGCACAGAGGGAACACACCAGGTCTGTGGATGCCCCGGCCAGATTCTAGGGTGGGCACCAAGGGTTTTTTGGATCTGAAGCAGAACCCGCGTACCCGATCTCCACTCTGTTTTGTTCATCGGAGTGCCACACACCTCTCTAGTGCTCTCTTGGGGCACTTCTCTTGTGTAGCACCTCTTGGTCACTTTGCAAGACTCTGATGTGTGATTGTGTGACGTATGCTGCTGACGCCATCCTGTGTCTTTTAG
Seq C2 exon
GGTAGACAACCTCAGCGTGTTGCAGATTCCCTGCAAGGGGAGTTAGACATCTGAGTCCTAGACCGAGATACCAGCTGAAGGAACGCTGCCTGGCGAACCCTGGTGTTCAAGTTCCAGAGGAACGGGATGAGCTCCTGAGATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096654-ZNF184:NM_007149:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.667
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGTTGTAGGCGTGGAA
R:
CTTCCATCTCAGGAGCTCATC
Band lengths:
286-825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)