HsaALTD1053786-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000170954 | ZNF415
Description
zinc finger protein 415 [Source:HGNC Symbol;Acc:HGNC:20636]
Coordinates
chr19:53122662-53132956:-
Coord C1 exon
chr19:53132856-53132956
Coord A exon
chr19:53132749-53132855
Coord C2 exon
chr19:53122662-53122743
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
CACTTGTTGTTGTTATTCAGCAT
3' ss Score
5.63
Exon sequences
Seq C1 exon
CAGCCATTCCTTCAGGCTGCCCGGGCTCTTCTCTCCGCGCATGCGCAGTTTCCTACAGGCCCGGAAACGGATCGCGTTGGGTGAAGGTGACGGCGTCGAGC
Seq A exon
GTGAGTGACCCTCTGTGTAGATTAAACCTGCGCTCCCTGTTTCCCATTTCCACAGCCGATGTCCAGGGTCGATACGGCCCTTAAAATCCCCGTACACTCCACCCCAG
Seq C2 exon
CATTGACTTCCAAAGACTCCTGGCACATGAGGAAGAAACCCAGAAGAGGAGAGCAAAGGAGTCAGGAATGGCTTTTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170954-0-8,1-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.228
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCATTCCTTCAGGCTGC
R:
TGAGTAAAAGCCATTCCTGACTCC
Band lengths:
182-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains