HsaINT1047453 @ hg38
Intron Retention
Gene
ENSG00000170954 | ZNF415
Description
zinc finger protein 415 [Source:HGNC Symbol;Acc:HGNC:20636]
Coordinates
chr19:53122662-53132892:-
Coord C1 exon
chr19:53132856-53132892
Coord A exon
chr19:53122744-53132855
Coord C2 exon
chr19:53122662-53122743
Length
10112 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
CACTTGTTGTTGTTATTCAGCAT
3' ss Score
5.63
Exon sequences
Seq C1 exon
AAACGGATCGCGTTGGGTGAAGGTGACGGCGTCGAGC
Seq A exon
GTGAGTGACCCTCTGTGTAGATTAAACCTGCGCTCCCTGTTTCCCATTTCCACAGCCGATGTCCAGGGTCGATACGGCCCTTAAAATCCCCGTACACTCCACCCCAGGTGAATACAGGCCTCGCAGTGTGGGTCCGGAGTCGCTTCCCTTTGGGTTGAAGTCGCTTTGAGGCTGCTCCCCGTCCCCGGCCTTTTGCTTCTTCCTCCCGCTTAAAACCTTTTCCTGACCCCCTCCCCCATCCCCGGGCTTTTTAAAGTCTTCACCCAAGAGGTGTATTCCCGTCCTGGGTGCCTCCCAGCCTTGCCCTCGTCGGCCCCTGGAGCGCAGCGCCGCAGCTGCAGCCGCAGTCCCGGGGAGCCTTGCGTCCTCTGCCTGGTCCTGGGATCCTGCAGACCCCACCCCTGTCTGAAGGCGCTGTCGCGCCCCACCTCCCTCCTCCTCGTGCCGGGCCCCGCTGCTCCCCAGGCCTCCCCTGAGCCCGCGCTGGGGAGGTGCTCAGGGCCTGTCCTGTGACACCCGATGTTCTTGCCTGCCCTCCTCCACCCCGTGGAAAATGCGCTCCTCCAGGATGCAGGCGTCTTACCCCAAACCGTCCTGTGAATGTGTGGGCCAAAGGGATCGAGGGACAGAGAGAGCAGTAGAAAACCTGAGACAGGAAGGAATGAGGCAAACCAATAAACAGATGGCAAAGTAGAGGATGGTTAGAGATTTTCAGAGACAGTAAGAGTGGAAGAAGAAGCCGAGAAAGTAGCAGGGAGAGAAAAGTAACTAGACACATTTCGAGAAAAAGCACAGTATCCAGAGAGATGAAGGACAGCCAGGTAGGGAGAGGGGCAGCAAAGGAGGAGGCTCCTCAGACAGAGAGTGGGGGAGAGCAGAAGGGATTTGGAGCCAGGGCAGACAGGGCAGTGTGGTACCGGGACAGCAAGAGGGGGCAGCCGATGACAAGGAGAAGCAGAGGGAGAACCACAGCACGGGGAGGCCTGGGATCTGGGGGTGCCAAAGAGTGGGGACAACGGTGTGTAACAGGGAAGAGGGAATTTAACAGGGAGTGCTGAAATGGGGAAGAAAGAGCCAGAAATATGTGGAGACTGGGACAATGAAAAGATTAGGAAGAAAGAGGAATTAAATACATTGCAAGAATGGAAAGAGCAAGTGGAAGAGAAAGAATAGAGGGAAGACGGGGAGGAGCAGCAGGAGAGGAGAGGGGCTCAAAATGAGCAGAATCCTAGGGAGAAAATAAAGGGGAAGGAAAGAGCTAGAGAAAGAAGGTGAGAATGAGAGCGATGTACGGAACGAGGGAGGGAAACACACCATAATGAGGAAAGAGGGGGACCCCAGGTCCAGGTGAGTTGTGAACTGACTGGATGTGATGACTACCTTTTGACCTGTTGATTTCTGTCTTTATAAGTTTAAAATGCACAGATGATGAGAATTGCAAAGCTCCTGTCTATTAAGGCTGGTGCATTTTATAATTATGGCATCAGAAGTTAGCTTCCACTTGCAATCCCTGTTAAGGCAGAGGGAAGTGACTTGACTCATTAATTCCACAGGTCATCCTCTTCCCCTTCCCTGGCGTTGGGGCAGGGGGAGGGGAAGGGGGAGTGGGAGAGTAAAGCTGGGCAGAAAGTGAAAGACTGTCACTACATAGTGTCTCTCTAAAGCAGGGGTGTCCAATCTTTTGGCTTCCCTGGGCCACATTGGAAGAAGAATTGTCTTGGGCCACACATAAAGTACACTAACACTAACAATAGCTGATGAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTGCAAGAAAATCTCAAAATGTTTTAAGGAAGTTTAGGAATTTGTGTTGGGCTGCATTCAAAGCCTTCCTGGGCTGCGGATTGGACAACGTTGCTCAAAAGGAACATTAAAAGTGTTGAGGCTGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGAATCACAAGGTCAGTAGTTCAAGACCAGCCTGGCAAAGATGGTGAAACCCCATCTCTACTAAAAATACAAAACTTAGCCAGGTATGGTGACACGCATCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAAAGCATTGTGTAAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGAGCCGAGATCCGGTGACAGAGCAAGACTGCGTCTGAAAAAAAAACAAAGAACAAACAAAAAAAGTGTTGTTGCTTTTTGTAATTGATTTGCTTTTTTTCTTACTAATTCCCTTTCATCTCATGTATAGTTCATTTTGCAACTTGAGATAGATCTTCATTAATTCAGTTTCTATTTTTCTGTATATAATTATTTCCAAAGTAACTTTGGTGGCATCCTATAATCAGCTCATGGCATTTTCTAAATATAATGTGTTTTCAATTTTTTTAGCTCCAAAATTCATCAGATATTTCTTAACAATTTCAAAATCTTTCCCTTTGAAATTAATTGTGTCCAGTTTTGATAGAGGTCTGCATGCTTTCTGCTCTTTATTATATAATAGAAGCATTATTTGTTGACTAGTAGGTAATTTTAGATTGTTTCAATGTGTACCTGATAAAGATGTCAATGATGTTTTTACCTTAACATGGAAACCTAGTTTAACTAGTCTATTATTCAATTTTCTTCTTTTGTGTAATTTGTTAAAATAGTAAGCTGTGAGCTGCATTTGGAACCAATGTGATAAAACCTTGAAGAAGTTTCTTTTGCTCAGATATGTGAAAGAGGGTCTGGGAATTTTCTTTTTTTCTTTTCTTTTTTTTTTTTTTTGTGAGCTGGAGTCTTGCTCTCTCACCCAGGCTGGAGTACAGTGGTGCAATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACAGGCCACCACACCCGGCTAACTTTTGTGTTTTTTGATAGAGATGAGCTTTCATCATGTTGGCCAGGCTGGTCTCAAACTCCTGGCCTCAAGTAATCTCCCCTCCTTCAGCCTCGAAGTGCTGGGATTACAGGCACGAGCCAACATGCCTGGCCAGTCCTGGAATTTTCTAAGGGAGATGTGATAAAGGCAAACACAGCCCATTGGCCCTTCCAGGTCGTGACATCATAATTCAGCCACATCTCCTCCTTCTCACTCAACTCAGACCTCTCAGGATAACTTGGTGAAATGACTCCCTCTCTCAGCCTCAGTGAGCCCACCTGTAACAGAGATAAGGGACTAGACCAGAAAACCTCAATGTGAGCAACACTGACTCCTGAAATTTGGGGCAAAATTGGGTGTGCATTTGTGTTTGGCAGTTGTATGTGGGGGGACTAGCCAGTTGCAATTAAAATTTTTATTTGGATTTCTTCCTCTAAAAATGAAAACAAGAATGTGAAGCAGGGACTCAGACACAGAGACCATCTTCGGGGCCTTTCTCTGTATGAGGACATCACAGAGAAATCTAAAGCAGGTCACGTCAGTCCCTGGCAGGGAACCCTCCACCAGCTTCCTGTGTTCCCCAGGACAAAAGCCCAACTCCTCACTGTGGCTCCACAGCCCTGTGTCCAGGGCCCCTGCCAGTGTCCAGCCTCCTCCTGGGAGCTTGCCCTCATCTCATGACTCCCTCTGCACCAGTCACATTTGCTTTTCTCTTTTCCCAAATGTCAAAACCCTTCCTGTCACGGGTCGTTGTCCCTGCTTTTACCCTATGTCCCTAAATGATCGTGACCCTGTCCCTTTTTCCTCCTTCGGGTCTAGACTGAGAGATGTCTCCCGTGCCCTCCCACCCCCATCTGAAATTCTCTCTGCCCGTCACTCTCTATCACATTATTCAGGTTTCACTGTCTCCGCATCCATCACCACATCGGACACTCTTCTGCGTGGATTATTTTGAGTGTTTTGTGTCTCCCTCCATTGGAGGACACAGTCTCCATCTGGGCCACGGGATGACTGCAGCACCTGCTCCGGGGTTGTGGTTCAGATGCTGGGGCTGGGGTTGGGCTGAAGACTCCTCAGGGAAGACCAAAAGGACAGGGCGGGTAGTGAGGATGGTCTCATATTCTGGAAATTTCATCTGTAATTGGTCTAAACTTCCTGTGGCTATTTATTCCAGTCTATGTAAGAGCAGAAGGCCTCACTGAGGCCTGAAAAGCCCCGCAGACCCTGTGTCCTCAGCCAGTGCCGAGGCGTCCCCACCGCCTTACTCCAGCTCCCGGGTCTTCCACGCTCTACACATCAGCGGGGCCCAGTGGCCATCCTGGGCAGGGGCTTTGCCTTCCAGCAGGTGATGCGCTCACAGTCAGGGGTCCTGGATTCCCTTCAGGAAGGGTGGCGAGAAGTTCAGAAGCTAAACGGGCCATGAAGGAGGCACTCCCTAAACAGCGGGGGAATTTGGCAGGGGACTGTGAGTGGAGAGACAAGGGGACAATGGCAGCCTCCCTCATGAGATCTGGGGCCTCTCTTTTTCTTGGACATCCTCCGTCAGCTCAGTCCAGCCAATCTTCACCTGCCTTTAAACTGGATTCCATGGTGTCCCCAAATTGGGGGCAATTCCTTCCAGCATGGCCAACTTCTAGAATCTAGACTTGAGGCCCACTGTCCTGCAGATAGCAGTTTGTGTCCATTCCTGCTTTTGTCCAGAGGCCCTTTTGCCTTTCAGCCTAGTGTGCTCTTCATGCATGGAAGAGAAGTAGAAAAATGAGGGAAAGTGAAGAAGCATTCTTGGAGGTGTCACATAGGGGCATGGAAGCAAGGTGGGCCTCTAGATGAGCCGGGTGAATGATGTGTACACCTGTCCCACGCATGCTTGTGGGATCAAGGAGTGAGTAGAATTGTAAAGGAATGTCTCAGGTCTGGCTGTAGCACATGGACGTGGGTTTATGGGTGGTTATGGGACTGCATGGATTAGTTTGGAAAGCCCTAGTATCTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTTGAGACGGTGTCTCGCTCTGTTGGCAGGCTGGAGTGCAGTGGTGCGATCCTGGCCCACTGCAACCTCCACCTCCTAGGTTCAAGCGATTCGCGTGCCTCAGCCTCCCGAGTAGCTGGGGCTACAGGCACGCGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAAAGACGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCCTGACTTCGTGATCTGCCTGCCTCAGCCTCCTAAAGTGCTGGGATTACAGGTGGGAGCCACCACGCCCGGCCGATCAGGAAGCTTTCAGATGCATTTTGAAAGATAGAAATAACAGTTTGGAGTGTTTTCTTGGAAGATATTAGGATCTCATTGGGGCACGTGCATCATTAGAGACATCTCTGTTTTATTGGTAGGCTTTGGTGGTACTTTTGTGTGGGGTGGAGTCACTATGAGTGGAAATAAATACATTGTCGTGGGTCAGTGAGACCCTAAGATATTTATGTGTATTATTTCATTGTTACTGGGACTTGCGAAATTTCGTAGCCGGGCTTCTATAAACCCTGTGTCCTCAGGCAGTGCCTGACCTTTATGGACTATCTGGGGAGTGCAAGACCCCATGGGAGTTTGTAAGCGTGTCTGAGTCCAGAGGGCAACGGGGATCCTAAGAATCAGGCGCAGATGGCTTTCATTAGGGAGGGTTTGTTGTGGGGGCGTCTGTGGGTGCAACTCAAGAGGGAGTGATTATCAGGGTCCCAGAGTAAGGGAAAGATTTCTCCAAGAATCAGAGTGAAACACAGCACACTGACCTGCGGCCCAAAGGCTTCCACTGGGACTGTCCTTGGGAAGATAAAGCTGCCACATTCTTGCAGCCAGGCCGGTGGCCTCTCCCTGTTTATTCCAAGATAACAGAGTCACAGAGTCACAAGGCAGCTGGGGAGCTGAGGGGCAAGGTCCTTGAAACCCGCTGTGGAACATGGACCTTTCTCCAGTGCAGAGGGGCCACGGGGCCCTGGGAAGGGAGTTGGAGGGTTACAGCCCTGGTCATGGCAGGGAGACGCAGGAACTGGAGGCAGGAAGAGCTGTGTTCATCCCCACAGGGTGCCCCTCCGCTCAGGAATTTGTGCAATAGAATGGGGTGAGCTAATGGGGTCACATTTAGGGAAAGGAGTCTTTCTGTCCACCCAACACACATCTCATCCTATGCACACGCTTCTCCCTTTCCCCATTGTCCTCTCTATGATGGGAAACTAATGCTTCCCTAGGCGGGTGATTGAGGGAGAGGAGGGGTTGGTCTGCTTGTGTCTCTCCTTTCTCCCCTCCCTCAAGTCTCCTGCCTGCCTTTCTGCTGCTCTGTTCAGACTCTCACTTCCTGCAGTTCTGCAGTCAGTTTGCCCCACGCAAGACCCAAGGATCTGGGTCTGTGAATAATATTCAAGCCAACATCATTGCCAAGTGAGAAATCTTAGACCCCAGGACCTTTTTTCCATGGAGGGGCCTGGGCACAGAGACAAACTCTTCTTTTTGCAGAATTTAGGGTCTTTTATTGGCCACGTGGGTCTGCTGAGCCTCAGACAGGGATCCCATAGTCAGCCAGATGTGTTTCTGGGTGGACTTGCGCTTGCCCTTCCACAGGTTGGTAAGCAGAGTGGTCTCCATGAAGGGCCCTTGGCTCTGCCCCTCAGCTGGTCCTGCTCAGGTCCCTTCTCACTCTCGGTGAAGACAATCCTCAGGTGAAACAGGACCCCTGCACACATCAGTCCCTCAAAGTGAACACCGTACCAGAGGGTGCACTAGTGTCACCCTGTATCATTCTGCTCATTTATTCAACAAATACTCCGTCATGTGCCAGGCTCTTTTTTTTTTTTTTTGTCTACACCAGGAATAATAATGGTAAAACAAAAGAATATGTGCCTCTACCATATCCAGTTTATTTTATTTTATTTTATTTTTTGAGATGGAGTCTCACTCTTGCCCAGGCTGTAGTGCAGTGGCGTGATCTTAGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCCCAGCCTCCCAAGTAGCTGGGACTACAGGCGCGTGCCACCATGTCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTAATCAGGCTGGCCTCAAACTCCCGACCTCGTGATCTGCTTGGGCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCTCCAGTTTATTTTTAAAATGATAGTGATATGGCAGGCATGGTTGCTCACGCCTGTAATCCCAGCACTTTCAGAGGCTGAGACAGGACGCTCACTTGAGCCCAGTTTGAGACGAGCCTAGGTAACATAGTGACACCTTGTCTCTATAAAAAATTTAAAAATCAGCCAGATGTGGTGGCTCGTGCCTCTTGTAGTCCTAGCTACTCGAGAGGCTGAGGTGGGAGGATTGCTTCAGCACAGGAAGCCGAGGCTGCACTGAGCCAGCATCACATCACTGCACTCTAGCCTGGCCAACAGCAAGATCCTGTTTAAAAAAAAAAAAAAGGCCAGGCGCGGTGGCTCACACCTGTAATCCTATCACTTTGGGAGGCTGAGGCGGGCAGATCATGAGGTCAGGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAGAAATTAGCCGGGCATGGTGGCATGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGGAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAACCTGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAATTGGACATAAACAGACCCTTTCAGTTACTAGATGATTTGCAAGTCAAGTGCACTAAATCATTTGTTTCTCCCAGACATCCCCACATCCAGCTCCGTTACTCTGCTTCTGTCCCTGTGTAGCTGACCACAGCCTGGAGAAAACATACAGCCAGAATTCCTGGTGTCATTTAATTCCTGCCCCGCACCTCTTCCATTCTCCTATTTTTCTATTCTGCACCTTGTCTCTGGAGATTTTCTTTCTTCTTTTTGCTCATTTAAAGGCCTTGGTTTTTTTCACCGTTGAGTCCCTGGAAGCAAGGAAGAGATCTTTTCCAACTTACCCACCCACCTGTCTCAGGGCTTGGGATCCCTACTCAGTAGTGACTGGGAATGGTCTGTTCCTGCTCCTGGCTGCTACTAACCCTCCAATTGTGTACCACACGCCAGCCCCACTCATAGCCTCAGAATGTGCAATTGTTAGGATATGATTTGTTTTGCCCCACCAACTCTCATGTTGAAATGTGATTTCCAAAGTTGGAGGTAGGGCCTGGTGAGTGTCATGGGAGCAGATCTCTTGGGAATGGCTTGATGTCATTCTCTAGGGAGTGAGTTCTGACTCTTAGTTCCCCTGAGAGCTGGTTGTCAAAAAGCCTGACCTCTCTCTCTCTCTCTCTCTCGTCTCCTCTCTCACCATTTTGTCTGCCCTGCTGGCGCCCCTTCACCCTCCACCCTAAACGGAAGCTTCCTGAGGCCCTCATCAGAGGCAGATGCTGGCACTGTGTTTTGTACAGCCTGCAGAACCATGAGCCAAATAAACCTCTTTTTTTTTTTTGAGACGGAGTTTTTCTCTTGTTGCCCAGGCTGTAGCAGTGGCGCGATCTCGGCTCACCGCAACCTCTGCCCTCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTACCAAGTGGCTGGGATTACCAGTGCCTACCACCATGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCACATTGGTCAGGTGGGTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGGTGGGATTACAGGTGTGAGCCACTGCGCCTAGCCTTCTCCTCAACTTTCTGCTAGGACATGTAACAGGTATCTCCACTTTCAGGTGTCCAAAAGTGACTTCCTGACTCCCTAGATGCATTCCCCTGCAGTCCTGCACATCTCAGATGAGCGGGACCATGTATTTCGTGGGACTTTCAAATATATAAGATTTTACATTGTAAGTGGGTTAATTTATAAAGAAAATATTATATATTTAATTAAAATGGGTGAGGAAATACATCATTTCCAAAATTCTTTTGAGGTGTGGGAGAAAAATGTTTGACAGCATCTGCCCTGCCTGATCTGCCCTCCCAGGACCTCTCTGACCTCATCTCCTGCCTGTGTCCTCCTCGCTCCCTCTGCTCCAGCCAAGCATGCGTCCTTCCTGTTCCTGGGCCGAGCTTGCTCCTGCCTCAAGGCCTTCACGTGGGCTGTGCCTCTGCTGGAACTCGCTGGCCCCTCAGCTGCAGGTGCAAACACCCCTCCTTCCCCAGGTCTCGGTTCCAATATCACCTTCTCAGCGGGGACTTCTGTGACCCACTTCCCATTTCACACTCCAGCTACACCCTCACCCCCACCTCTGGTCCATATTACCTCCTCTGCATGCTTCTCTTGATTCTTTCTGCTTCCACTGTCTGGATCCTGATGACACCAAGGTCTCAAGGGGAGAATAGAGTCAGAAGGTGGGGGCTATGCTGGGCTGACCACATGTGAGTAGAGCTACCCCCTGGCTTCATATGAAAGTGCTGGGGTACTTTGCAGATATACCTCTTGTGCCCCCATCCCTGTCCCAGAGATTCCCATTCACACAGGTTGGGACCCACCCTCGATAATACAGTGCCCAACATGATTCTAATCTATATCCAGCCCTGAACACCAAGGCTCTGTGTCCTCTATTTCTGAGGGCTGAGCCCAGCCTGGGATCCAGAGAGGGAAAGGGGGCTGTGCTCTGCATGGGGTTTAATCAGGGCTGGGTCTCCTCCCCACTGCTGCAGCATGTGTGTGAGCTTCTCCAGGAGGGGAGGGAGTTCTGAAGAAAGGGGTCAGAAGACTCATGTATTGGTTTTCCTGTAGGAGTTTCTTGTCCCTGGGGCCACCCTGGTGTAGTGGGCGGCAGAGGACCGTCTTTGCACAGGGCGAGCTCCTCCCTGTGTATGTGTGTGCTTGTCACACAAGAGGGGGTGTGTTGTTTCTAAGCAATAAACAGCACTTGTTGTTGTTATTCAG
Seq C2 exon
CATTGACTTCCAAAGACTCCTGGCACATGAGGAAGAAACCCAGAAGAGGAGAGCAAAGGAGTCAGGAATGGCTTTTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170954:ENST00000243643:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.228
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains