HsaALTD1053795-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000127081 | ZNF484
Description
zinc finger protein 484 [Source:HGNC Symbol;Acc:HGNC:23385]
Coordinates
chr9:92875015-92877990:-
Coord C1 exon
chr9:92877890-92877990
Coord A exon
chr9:92877820-92877889
Coord C2 exon
chr9:92875015-92875059
Length
70 bp
Sequences
Splice sites
5' ss Seq
CCGGTCAGT
5' ss Score
7.53
3' ss Seq
CTACCCATCTGTTTTCTCAGATT
3' ss Score
9
Exon sequences
Seq C1 exon
GCATTGAGAAAAAGGAAGTGGGTCCTGTTCTGGTTCTTGCGACTATAGTCACCTCCCGAGGCAAATGACCACTGTCCTGAGAGGACGTGGGTGAGGGGCAG
Seq A exon
GTGAGTAGAGGGATGGCAGCATCTGTGGACTGAGCAAGAAGAATCTCTGATGTCTGTCCTGAGCCTTCCG
Seq C2 exon
ATTTCTGCCCCTTTGTCCGAAGAGCCAAAAATGACCAAGTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127081-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGAGAAAAAGGAAGTGGGT
R:
AGGGACTTGGTCATTTTTGGCT
Band lengths:
145-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains