HsaEX0073772 @ hg38
Exon Skipping
Gene
ENSG00000127081 | ZNF484
Description
zinc finger protein 484 [Source:HGNC Symbol;Acc:HGNC:23385]
Coordinates
chr9:92856192-92878008:-
Coord C1 exon
chr9:92877890-92878008
Coord A exon
chr9:92875015-92875059
Coord C2 exon
chr9:92856192-92856318
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTACCCATCTGTTTTCTCAGATT
3' ss Score
9
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TACCTCTAGGCCTGGGAGGCATTGAGAAAAAGGAAGTGGGTCCTGTTCTGGTTCTTGCGACTATAGTCACCTCCCGAGGCAAATGACCACTGTCCTGAGAGGACGTGGGTGAGGGGCAG
Seq A exon
ATTTCTGCCCCTTTGTCCGAAGAGCCAAAAATGACCAAGTCCCTG
Seq C2 exon
GAATCAGTGTCATTCAAGGACGTAACTGTAGACTTCAGTAGGGATGAGTGGCAACAATTAGACCTTGCTCAGAAAAGCCTGTACAGAGAAGTGATGCTGGAAAACTATTTCAACTTGATCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127081_MULTIEX1-1/8=C1-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.250 C2=0.046
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGACTATAGTCACCTCCCG
R:
ACAGGCTTTTCTGAGCAAGGT
Band lengths:
146-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development