HsaALTD1053797-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000081386 | ZNF510
Description
zinc finger protein 510 [Source:HGNC Symbol;Acc:HGNC:29161]
Coordinates
chr9:96776000-96778134:-
Coord C1 exon
chr9:96778034-96778134
Coord A exon
NA
Coord C2 exon
chr9:96776000-96776245
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AGCAGCTCTTTATGTTGCAGGAA
3' ss Score
8.02
Exon sequences
Seq C1 exon
TGGGAACGGATATGCGCGTTTTCGTCTGCGCATGTGCAGTCAACCCCACTTTCCGGCTTCTCCCTGTTAGTGTTTGCTGGTGCAGAGGGTTCGCAGCTCAG
Seq A exon
NA
Seq C2 exon
GAAGGAGGGAGCCCCAGGAACAGGAGTCCCACCGAAGAACTGCTCTCTGACAGAACAGAGACCTCCTCACCAGGGCTTCCAAACAGATGCAGAAGAACCCAGAAAGGAGCAGGTCTTGATTTGCCCAACCAGCGGCACTTCTTCATCCCCTTGCCCAGAGAGCACCAGACTTGGTGATGTCGCCACATCCAGAAGCCATCACAGATTGTGTGACACTGAACACTGTGGGCCAACTTGCAGAAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000081386-0-2,1-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.042
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACGGATATGCGCGTTTTC
R:
CTTCTGCAAGTTGGCCCACAG
Band lengths:
342-794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains