Special

HsaALTD1053805-1/2 @ hg38

Alternative 5'ss

Gene
ENSG00000171466 | ZNF562
Description
zinc finger protein 562 [Source:HGNC Symbol;Acc:HGNC:25950]
Coordinates
chr19:9660720-9675115:-
Coord C1 exon
chr19:9675015-9675115
Coord A exon
NA
Coord C2 exon
chr19:9660720-9660874
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TTGGTGATTGGTATGAACAGGGC
3' ss Score
3.29
Exon sequences
Seq C1 exon
AGCGGAAGTGACGTCAGTGTGCCACCGCCATCTTTACCGGCTGTGGCTCAGCATGGTCAGTGCCGTTTAACCTTTATTGTGGTGGAGTCCACCCCGCTGTG
Seq A exon
NA
Seq C2 exon
GGCCTCAGATAACCCTGTACAAAGGGGAATGGAGATTGCCTGTATCCACCTAGATTCATAAGCTGCCCTGAGGCGATCTTGGCATCAAGAAAGACAGCATTGAGGCACATCTCACCATCAGCTTCAGAGGATGTCAGCCTTTGATATGTCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171466-0-5,1-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGAAGTGACGTCAGTGT
R:
TGGGACATATCAAAGGCTGACA
Band lengths:
254-637
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains