HsaALTD1053806-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000186017 | ZNF566
Description
zinc finger protein 566 [Source:HGNC Symbol;Acc:HGNC:25919]
Coordinates
chr19:36476549-36489586:-
Coord C1 exon
chr19:36489486-36489586
Coord A exon
chr19:36489474-36489485
Coord C2 exon
chr19:36476549-36476616
Length
12 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TCTTCTTTTGCCTCTCCCAGCTC
3' ss Score
8.81
Exon sequences
Seq C1 exon
CTCGCGGTAATTCAGCTTCCAACTCACGCGCTGGCGGGACCCTCAGGGCTTTACCAGCAACTACCCCAGTGCCGGGGAGGGTTCTGCTGCTTCGAAAGCTG
Seq A exon
GTAAGGCCTGAG
Seq C2 exon
CTCTACCCTTCTCCAAAAGAAGAGCCAAGAGAAGGTCCTTTTCTACAAATATCAGAGCCATGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186017-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTACCAGCAACTACCCCAGT
R:
AGGACCTTCTCTTGGCTCTTCT
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains