HsaEX0073950 @ hg38
Exon Skipping
Gene
ENSG00000186017 | ZNF566
Description
zinc finger protein 566 [Source:HGNC Symbol;Acc:HGNC:25919]
Coordinates
chr19:36447629-36489561:-
Coord C1 exon
chr19:36489474-36489561
Coord A exon
chr19:36472911-36473006
Coord C2 exon
chr19:36447629-36450001
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTTACTTCTTTTGTAAGCAGGGC
3' ss Score
4.79
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ACGCGCTGGCGGGACCCTCAGGGCTTTACCAGCAACTACCCCAGTGCCGGGGAGGGTTCTGCTGCTTCGAAAGCTGGTAAGGCCTGAG
Seq A exon
GGCATTCTATTTCTAAACCAAATGTGATCTCCTACTTGGAGCAAGGGAAGGAGCCCTGGTTGGCTGACAGAGAGCTAACAAGAGGCCAGTGGCCAG
Seq C2 exon
TCCTGGAATCAAGATGTGAGACCAAGAAATTATTTCTGAAGAAAGAAATTTATGAAATAGAATCAACCCAGTGGGAAATAATGGAAAAACTCACAAGACGTGATTTTCAGTGCTCCAGTTTCAGAGATGATTGGGAATGTAATCGGCAGTTTAAGAAAGAACTCGGCTCTCAGGGGGGACATTTCAATCAATTGGTATTCACTCATGAAGATCTGCCCACTTTGAGTCACCATCCATCCTTCACATTACAGCAAATCATTAACAGTAAAAAGAAATTCTGTGCATCTAAAGAATATAGGAAAACCTTTAGACATGGCTCACAGTTTGCTACACATGAGATAATTCATACCATTGAGAAGCCTTATGAATGTAAGGAATGTGGAAAGTCCTTTAGACATCCCTCAAGACTCACTCATCATCAGAAAATTCATACTGGCAAGAAACCCTTTGAATGTAAGGAATGTGGAAAAACCTTTATTTGTGGCTCAGACCTTACTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186017_MULTIEX1-3/5=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.068
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF097235=Zn-ribbon_8=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6)
Main Skipping Isoform:
ENST00000587567fB30820
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGCAACTACCCCAGTGC
R:
ACTGGAGCACTGAAAATCACGT
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development