HsaINT1047551 @ hg38
Intron Retention
Gene
ENSG00000186017 | ZNF566
Description
zinc finger protein 566 [Source:HGNC Symbol;Acc:HGNC:25919]
Coordinates
chr19:36472911-36473458:-
Coord C1 exon
chr19:36473332-36473458
Coord A exon
chr19:36473010-36473331
Coord C2 exon
chr19:36472911-36473009
Length
322 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTGTTACTTCTTTTGTAAGCAG
3' ss Score
1.24
Exon sequences
Seq C1 exon
GAGTCAGTGATGTTCAGTGATGTGTCCGTAGACTTCTCTCAGGAGGAGTGGGAATGCCTGAATGATGATCAGAGAGATTTATACAGAGATGTGATGTTGGAGAATTACAGCAACCTGGTTTCAATGG
Seq A exon
GTAAGGACATCTGTCCATAGTAATTTAGATTCTGCCCTTGGAAGGCCTACTTCCTCCAATGTGAAATGCTCACCTGGCTTTCAAAAACCAGTCGAATTTTGATATCCTGTTCCACAGGAATGTTCTGAATATGGTAGAGTTAGAAAAAGGAAGCTGCATTGAGTTTTTGGGGATGTTTTACATCTTCCGTTATGTTTCATAAGTCCGTTGTACCTCTCTTTGACTCTTCTCATAATGCCATGTCTTTCTTTATAATGAAGGGACTGGATTTGAATTCTAGGATATGCTCATGATAAATTTGTTTTGTTACTTCTTTTGTAAG
Seq C2 exon
CAGGGCATTCTATTTCTAAACCAAATGTGATCTCCTACTTGGAGCAAGGGAAGGAGCCCTGGTTGGCTGACAGAGAGCTAACAAGAGGCCAGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186017:ENST00000392170:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTTCAGTGATGTGTCCGT
R:
CCACTGGCCTCTTGTTAGCTC
Band lengths:
215-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains