BtaINT0165736 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004939 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:HGNC:24737]
Coordinates
chr18:47629549-47630078:-
Coord C1 exon
chr18:47629952-47630078
Coord A exon
chr18:47629645-47629951
Coord C2 exon
chr18:47629549-47629644
Length
307 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ACATCCTTTCCCTTTCACAGGAT
3' ss Score
11.05
Exon sequences
Seq C1 exon
GACACGGTGACATTCAAAGATGTGGCTATTGACTTCACTCAGGAAGAGTGGAAGCAATTGGATCCAGCTCAAAGAAACCTGTACCGGAATGTGATGCTAGAAAACTATAACAACTTAATCACAGTGG
Seq A exon
GTAAGGGTAGTTTCCTATATAACTCAAATTCTGGGAGTAAAGTTCCCTTTTTCCCCCCAGTGTTTCTGAAATGGGTCCAACCTTCAATTATTAGACTGAGTTTGGTCTTTAGATGCCTTTGTTCACATGCACATGCATGTTGCAGCTTTCAAAGCAAAATGTCATCTATGGTTATGTTTCAGGGGGCAGCATCCCTAGAAACAATGCTTTTCTTATCTTTCAGAAGGCCTTGGGCTAGCCTCAATTCTTGAATGATTCTTTTTTCCTACTATTTATGCCCAAATCTTACATCCTTTCCCTTTCACAG
Seq C2 exon
GATGTCCATTCACCAAACCTGATGTGATTTTCAAGTTGGAGCAAGAAGAAGAACCATGGGTCATGGAGGAAGAAGTGTTAAAGAAACATTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004939:ENSBTAT00000031518:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGTGACATTCAAAGATGTG
R:
TGTTTCTTTAACACTTCTTCCTCCA
Band lengths:
214-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development