MmuINT1035726 @ mm10
Intron Retention
Gene
ENSMUSG00000059975 | Zfp74
Description
zinc finger protein 74 [Source:MGI Symbol;Acc:MGI:107784]
Coordinates
chr7:29937600-29938068:-
Coord C1 exon
chr7:29937942-29938068
Coord A exon
chr7:29937696-29937941
Coord C2 exon
chr7:29937600-29937695
Length
246 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TCCCCTCCCCCACCCCCCAGGCC
3' ss Score
11.47
Exon sequences
Seq C1 exon
GGACTAGTGACGTTCAAAGACGTGGCCATTGATTTTACCCAAGAAGAATGGAAGCAACTGGATCCTACTCAGCGGAACCTATATAGGAATGTGATGCTAGAAAACTACAACAACTTAATCACAGTAG
Seq A exon
GTAAGATAATGTACCTTTTCTAAAACAGATGCAATTGTTAATGTTGATGAGCCTTGCCTTGAGGTGCCTTGAGATGTTGCTGTCCCTGCCCCAGCTTTCGAAGGAAAATCTTTGGTGGCATTCCAGGGTACAACATTCTCAGAAGTTAGTACACCTGGCTCTCCCAGGCCCAACTCAGAATCCAGGGTTGTTTTTGTCACTCGTGTGTATACCCAAACCAATGTCATCCCCTCCCCCACCCCCCAG
Seq C2 exon
GCCCGCCACTCACCAAACCTGAAGTGATTTTCAAGTTGGAGCAAGAGGAAGAGCCTTGTGTGGTGGAGAGAGAAGTGCTGTGGAGACCCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059975:ENSMUST00000108205:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTAGTGACGTTCAAAGACGT
R:
GACAGGGTCTCCACAGCACTT
Band lengths:
220-466
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types