HsaINT0187681 @ hg38
Intron Retention
Gene
ENSG00000189042 | ZNF567
Description
zinc finger protein 567 [Source:HGNC Symbol;Acc:HGNC:28696]
Coordinates
chr19:36712386-36712867:+
Coord C1 exon
chr19:36712386-36712512
Coord A exon
chr19:36712513-36712780
Coord C2 exon
chr19:36712781-36712867
Length
268 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
GTCTTTTTTTCACTTTTCAGGGT
3' ss Score
11.72
Exon sequences
Seq C1 exon
GGATCAGTGTCTTTCAATGATGTGACTGTGGACTTCACTCAGGAGGAGTGGCAGCACCTGGATCATGCTCAGAAGACTCTATATATGGATGTGATGTTGGAAAACTATTGCCACCTCATCTCTGTGG
Seq A exon
GTAAGAAAAATCCTCTTTGAAACTTTAGTAGCATGCACTTCCTCTCAAAGTGCCTAATTGTGTATAATCTTGAATTTCAGGAATAAGAGGTGATGAATTCCTTTTCGTTAGCAGAATGAATGATTGTGTCTTCACTTACCCAGTGCAAGGTGCTACCTATATTGTTACACAAATGGGTGTCTTAATTTGCAGTACTGAACATGCCCCTTTCCTCATTTTTCAGTGGTATTATAGCCCAATCAACTTAAGTCTTTTTTTCACTTTTCAG
Seq C2 exon
GGTGTCACATGACCAAACCTGATGTGATCCTCAAGTTGGAACGAGGAGAAGAGCCATGGACATCATTTGCAGGTCATACCTGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189042:ENST00000536254:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGTCTTTCAATGATGTGACTGT
R:
GGTATGACCTGCAAATGATGTCCA
Band lengths:
204-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains