HsaINT0187681 @ hg19
Intron Retention
Gene
ENSG00000189042 | ZNF567
Description
zinc finger protein 567 [Source:HGNC Symbol;Acc:28696]
Coordinates
chr19:37203288-37203769:+
Coord C1 exon
chr19:37203288-37203414
Coord A exon
chr19:37203415-37203682
Coord C2 exon
chr19:37203683-37203769
Length
268 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
GTCTTTTTTTCACTTTTCAGGGT
3' ss Score
11.72
Exon sequences
Seq C1 exon
GGATCAGTGTCTTTCAATGATGTGACTGTGGACTTCACTCAGGAGGAGTGGCAGCACCTGGATCATGCTCAGAAGACTCTATATATGGATGTGATGTTGGAAAACTATTGCCACCTCATCTCTGTGG
Seq A exon
GTAAGAAAAATCCTCTTTGAAACTTTAGTAGCATGCACTTCCTCTCAAAGTGCCTAATTGTGTATAATCTTGAATTTCAGGAATAAGAGGTGATGAATTCCTTTTCGTTAGCAGAATGAATGATTGTGTCTTCACTTACCCAGTGCAAGGTGCTACCTATATTGTTACACAAATGGGTGTCTTAATTTGCAGTACTGAACATGCCCCTTTCCTCATTTTTCAGTGGTATTATAGCCCAATCAACTTAAGTCTTTTTTTCACTTTTCAG
Seq C2 exon
GGTGTCACATGACCAAACCTGATGTGATCCTCAAGTTGGAACGAGGAGAAGAGCCATGGACATCATTTGCAGGTCATACCTGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189042-ZNF567:NM_152603:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGTCTTTCAATGATGTGACTGT
R:
GGTATGACCTGCAAATGATGTCCA
Band lengths:
204-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)