BtaINT0165729 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002398 | ZNF567
Description
zinc finger protein 567 [Source:HGNC Symbol;Acc:HGNC:28696]
Coordinates
chr18:47095252-47095722:-
Coord C1 exon
chr18:47095596-47095722
Coord A exon
chr18:47095339-47095595
Coord C2 exon
chr18:47095252-47095338
Length
257 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
CCAAATCTTCCCTTAATCAGGGT
3' ss Score
6.23
Exon sequences
Seq C1 exon
GGATCAGTGTCATTCAAAGATGTGACTGTGGACTTCAGTCAGGAGGAGTGGCAGCACCTGGATCCTGCTCAGAAGACACTCTACATGGATGTAATGTTGGAAAACTATTGCCATCTCATTTCTGTAG
Seq A exon
GTAAGAAAAATTCTTTGAAACTTTCAGTAGCATGCATTTCCTTTGAGAGTGCCTAAAATACATGTGATCTTGGATTTCAGGGATGAATTCTTTTTGGTTGACACAAAGGATAATTGTGTCTTCACTTGCTTAGTACAAGGTGTTAAGTTTACTCTTACATGAAGGAGTATCTTACTTTACAGAATGGAAATTCAACTTATTGATTTTTCAAATGTATTAACATCTAAGCAACTTAATCCAAATCTTCCCTTAATCAG
Seq C2 exon
GGTGTCACATGACCAAGCCTGATGTGATCCTCAAATTGGAACGAGGAGAAGAACCATGGACATCATTTAAAGGTCATACCTGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002398:ENSBTAT00000018075:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCAGTGTCATTCAAAGATGTGAC
R:
ATGACCTTTAAATGATGTCCATGGT
Band lengths:
204-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development