RnoINT0168020 @ rn6
Intron Retention
Gene
ENSRNOG00000001094 | Zfp316
Description
zinc finger protein 316 [Source:RGD Symbol;Acc:1311647]
Coordinates
chr12:13355491-13364338:+
Coord C1 exon
chr12:13355491-13355604
Coord A exon
chr12:13355605-13361972
Coord C2 exon
chr12:13361973-13364338
Length
6368 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TTTCTCTTTTCATCCGTCAGGAG
3' ss Score
7.23
Exon sequences
Seq C1 exon
GATACCCAATCCCTAAGCCGGATCTGATCTTCCACCTCGAACAAGGAGAAGAACCTTGGGTCGAAGACAGCCCCCATCCCGAGGAGGGAGACGTCGTCACTGGTGTCTACACGG
Seq A exon
GTGAGTGGGACACCAGCCTTGGAGGGTCATTGCTCAGAGCTGTGTCTGACTTTAGCCTTTACCAAGGCAAGCACTCAGCAGATCTTCGCCTGGTCCTCTACCTCCCTGAGAGGTTAATGCTAATGTCTTGGGGTCTGCAGTGGTTGTGAGGAGACAGGGAGGGCTGCTGTGTGCTGACCCCTGCCGTCCGCTCCCGAGTCTTGGTCCAGCTTCACAGAGCTCTAAGGGCTAGTGCACGTCTTTAGAGAACCTTCAGAGTCCATTTCGTTTATTTTTTTCTTCCTTCATAAATGAGTGGAGTTGGCAAACTGGCACAGAAACCCACCAAACCGTCAGTGTGGCTTTCCACACTTGGACCAACCAGTTTTCTGGCTTGCCCACCTATTTGACCATAAGGGGTCTCCACTTCCTCCGCAGTCTCTCCACTTCCTCTGGAGCCATCCAGCCTGATTTTTCTCTTTTGAGACAGAGTCTCACTGCTTTTGGAGGCTCACCAATTGAGGCTGGCTGGCCCATGAACTCCAGGGATCCACCTCTCTCTGTCCCTCCGGGGTGTGCCACCATGCCAGCACCTCCTCTTCTGTCTCCCCCTCCACTGCCTTGCACTGGTTCAGGCTTTGCCTGTTCAACTCCCTGGGCCCCACATTATGCATACGGAGGATAAAACAACTGAACTAAACCCTCAGACTCCACCCCGAGCATGCACATGGAATACGCTATGGGTTCTACACATCTCATGGGGTCTTTGGAGTGATGGAGACCCTTGCCTGAAAGGTGTCTCTCTGGGGGGCTGGGGTGTTGTCACCCGACGGTGGGGTTATATCATAGATGTGTATGAAAGCAAGAAGACGGGAAACCTCACTCTGGTGTGCTCATGAGTCCTCACAGCAGCGTACTGAGGGGCAACCAGGAATCTAGCCTTCCTTCAGATGAAGCCCCCAAACTAGGTAGTGTTCTTTTTTTTTTCCGGACCTGGGGACCGAACCCAGGGCCTTGCAGTTGCTAAGCAAGCGCTCTACCACTGAGCTAGATCCCCCAACCCCCTAGGTAGTGTTCTTGAGGGCCCAAGTGGGAGGTGTGTTCCATTCATGGACACGTCTAGAAAACCCACTTAGAGTGGGACACGAGTCAACCTCTTGAGTGTAGGTTCAGGGTGTGCCCTTGTGTTCCCTTGAAGGGTCCATGGGAGGAGTCTGGTCCTTCTCAGTGCAGGTGACACCAGGTAACAGGTGCCACACAGCTACACACCTGGATGGGAACCGGAAGCTCGTTGAGAGGACTGGCTAACTGGGTCAGTGGCTCTGTTTCTTCTGTGTTGGAGCTGGTGGCCCGAGATGTCTCTCAGCCTGGCTCTGTCTGCAGAGTGGCAGCTGGCAAAGGGTCCATGAACATCTTCTAAACAGTGGTTCTCAACCTTCCCTGTGCTGCAGCCCCTCATGTTGTGCTGAGCCCCAACCGAAGAGTTATTTTCATTGCTACTTCCTAACTATAATGTTGCTACTGCCATGAAGCACAATGTGGACATCTGTGTTTTCCGGTGGTCTTAAGCAACACCTGTGAAACAGCTGTTTGATCCTCAAAGGGTCATGACCCAGCACTCAGGAGGCAAAGGCAGATGAATCTGCTTGAGTTTCACGTGAGCCAGGGCTACAATGTCTCAAGAAAAAGAATCATGGGTGGGGTCAGAGGACAACCCCAGCGCTAGTTCTCACCTTCCACTTTTTGCAACAGGGTGTCAGTATGATTCACCACTCACATAGGGTCTGCTAGCTGCCTGTGGGCTCTCCAGGATTCTCCTGCCCGCCAAAGGATTAATTGATTAGACACGAGAACTATGCCTGGCTTTTCATTGGCACTTGGGGTTTGAACTCAGGTCCTCATGCTTGCATGGTGAACACTTTACTTCTGAGCTATTCTCCTCCCAGCCCCCAGTGCATGTCTGATGTGTCACATGACTGCCCATAGGGGATCCAAACGTGATGGCCGACTTTGGGGGAAGCCCTCAGGTCTTCCCTTCTGAAGATTCTGAGGATACTGAGAGGTTCATTGTCTGCCTCTCTTTTTCCTCTGTCCTTTTATATTCGTCTCTGCCCAGCAGTGCCAGCTGGGCACTGAGACTGTCTGAGTCTGTCCTGAGGCTGGCCATCTGGATTTCTAAATTAGTCCTGTAAGACAAGACTCTAACCTGCCTCTGTCCCTTGTGAGTTCAGCTGTACATGACGTGTGGGCGCCTGGCCTCGTCCCTTCATCAGGTGTTGTCACTTTCTGTGTGATGCTCAGTCCCACTGCCTGTCAGCCTGGTCTCTAGGTATCCTAGCCACCTCCAACTCTTCACTCCTGCATCATCCAGACAAGTTCATCCTCCTGACCCAGTTTCCACACCAGGGTCCTTGGTCCGTGTAAACACCCATGTGGTCTGGAGAGATCCCTGCCTCCAGTCTGCAGTGCAGGGAGTGCAGCCGGAGAAGGCCTACCCCAGTGGCTGCTGCCCCTTTCTCTGTGTCTGTGTGTCCCTGGCCTTATGACTTGAGACAGACCTTCCCTGCTTTCTTCCTCCCTAGCACTACAGAAGCTGTGCCGACTAGAGCAGGACTGGCCCTGTAGGGGCCACCCCGACTCCACTGCAGGCTTCTGCCCGTTTTCTTTTCTTGATGTGTGTGCATGTGTGCATGTGCACATGTGCAGTTGTGCATGGAGGCTGGAAGTCAACATAGGAGCTGTCTGCCTTGCTGAGGCAGGGTTTCTCGCTGGGATCTGGGGCTTCATGATTTGGCCGGCTGGCCGGTGAGTCCAAGGACTCTGTCCATGTCCGCCCTCCCTAGTCTGGATCACAAGCACATTGCCACATTAGCTTTTCACACACGTGTGCTGGGAAAACTCAGGGGTTTGTACTCGTGTGGCAAGTGCTAGGATTTACCATCTTCCCAGCCCCATTTCCGGAAGAAAAGGATAAAAAGGACACACAACACCCAGGAGTGGCCCCGTTTAAACATTAAGATATAGTTCAGTGGGTAGAGATGTGGGTTAAGCAGTGAGGATCCAGAACTAGCAAGTAAGCACAGCTGTGGTGGGGCTTGGGGCATGTCTGGAGCCCCTCACGTGACCCTTCTCAACGAAGTGCACGCTGTGAGCCTTGGGACAGCTGACCCAGCAGCTCTTGGCTACCTAGTGGTTCAGCTAAGCAGAAATGAGCACAGGGAAGGGAGAGCCACAGGGAAGAGGTCTGTTGGCCAGGGGCAGTGCAGGAACACCCCAGCAGGCAGTCCGGCACACAGCCATGAACAACTAGACACTTGAGAGCAGCGCTTCTCATTCTATGGGCCGAGATCTCTCTGGGGTCGCATTATCAGATATCCTGTATATCAGATATTTACATTACGATTCATGACCCTAGCAAAATTCATTATGAAGTCACAATGAAATAACTTTATCATTGGGTGTCTCCACAATATGAGGGGCTGTGTTAAAGGGTCACAGTTTAGGAACATTGAGAACCGCTGCTTTAGAGGGTCCCTGGAGGGAACCTGGAGAGTAGCGTCCTCTAGTCCTAGTCAGGGCACAAAGGGCTGGAGTTCTGTCGTTTCCCAGGTCCCTGGGCTTGGTGCAGGTGGGAGGGAAGAACAGACAGTATCTGGCAGAGAGGCTGGCTTAGCACCTGGAGCAAAGGGGCAGACAGATGTCCAGGTGCTGAGCACATGCTCTGATGGGGTGACAAAGGTCTCCATCTGGGCAGACCCAGCTCCAGTTAACACTAGGGCCTTGGTATTGAATCTGCACATCACGCATGAGACATCAAGGCCAAAGAATTGCTGGTTTTTTAGAGGCCACTCACCAGCAATTTGGGGGTGGGGGGCAACCCAGTGCCCATCCCCAGAGAAGGGCTGCCTGCCTCCAGACCTGTTTGCTTGTCCACAGCTTGGCTTAGGGGGCAGATGCCAGTTACAGGAGCTGGTTGCCTTTCCAAGCTGTAGTTCAGACACCTCCCTGGCAGTGATGCTGCCAGCATCTATAGACTTGCACACCACTGTAGAATGCCTCCTCCCTTGGGGACTGTCCCCAATAAGGGACGGAACTTTGCCTGAGCTCATCTCCCACTGGAGATGGGGGTGGATGCTTATCTGGGCCCATCAGGACAACAGATTGTTAATGGGAAAAAAATGGCAACTTGACTAGGGACCTCAGTCTCCAATACCTTGTCAGGATCAGTGGTTCTCTACGACTGATGCCAGGCTGCCTCCAAGACAGCCAGCGCCCCACCCTGTAGCCTTGGAAGGGACTGGTCGCTCAGGGTCTCTGGAGCAAAGATCTGGGTAAAGGGCCCAGCTTGACTCATGCAGTCCTCGGAGAACACATAGACTTGGGGCGTCTGCCATGGGAGATCTCCTGGGGTGAATCATGGAATGAACTAGTTTCGGGCTTGTAAATCCCAGGACTGTGCATCAGAGGAACCTAGAAGACTCATACCGCCAGCTGCTATAACAAAGAGGCTGTGACCCAGTGACATTTGAGACATGGGGGAAACTGGTGACAGCCCACAGTTCTGAGGGCTTCAACTTACTACCCTCTACCAGCTCCTCTCCCTTTTCCCTTACTGTGAGCAGGAAACCGGTTTTACCAGGGTCTGGGTATCCCAAGCTCAGGGCATGGCTTGTGAAGATATTCTTGTGGCCATGCTGTGTAATTTGCTGGACAGTGGGCTTTGAGCCTGTGTTTTCCTGGAACCTTCACCTACGGTCAGATCCTTGGAGAAAGTGTTGGGTACAAGGCAGCCCTCACCCCAACTTCACTACCCTGTGGGTCTGGGTTTGGCCCTCAAGGTCACCTTGCTGCCCTCCCCCACCACCTGCTAGCTGTTAAGGAACACAACACACCATAACCCTAGGTTTCAAGTCTCACGGCATGCCTGACGCCTGATGAATCCTCACCTGAGACTTACAGAGACAGGCTCTGTGTGGTGGCTGTCACTGGAGATGGCTTTGAGCAAACACTCTAAGCAGGAAATGGGGGACCAAAGCTGGTCTCTCTTGGGGTTCTCCTTTCCCAGAAGGCCTGTAGCTTCCTGAGGGGTACCTTGGGGTAGAGCCAGCTCTGACTTCTCCAGAGTGGCCTCTAAACACCGCTGAGCACAATGCAGGCCTCATGCTTGCTGAGCGGTGCCAACCCGAGGTAGCAGTGAGTCCCCAGGCCTCTCAGAATTACCCACCCCACAGAGAGAACTTTGCAGAGTGGGGTGCAGGGGCTTACCTTCTAAGACAGTAGGCATCCCTGCTGTCCCCAGACTCTGGCCAAGTCCCAGCCTACCCTCTCAGCTCTTGCTAGAACTAGGTCCCGGAGAGTTGCAGACTGGCTCAGAAATCCAGGGACTTGGATTTGTTCCTCTGCATTGGCTTCCCTGCCTTACTGGGCTCATGGGTACGTGGCCGCCGGCCACTCCTCATTACTCTGGTGACAGCTGGAGGTAAACTGGCTTAACAAATGTTTCCATTTACAGCTTCTAAATTATATATTACCACAATGGTGGTACAGACTAAGAAAAAAAAATGAACCCATTTCCTTGCCATATGACAGTGTGCTCATCCCTATCTGTGGCTAGGCCCTTGCAGCTTCGTGTGTGTGGCACTGTGCTGTCTTCTCCTGTGAATAACATCTAGAATGCAGAAGGAGGGCTGCTGACCTTATAAGCCAGCTGTGGTTTTTTGAGACGTCTTGGCCCAGTCCCTGGCTTCTGTGGTCTAGGCTCACCCGGGGCCAGCAGCAGTCTAGATGGGCCACACCTCTGCCCTCAGATTCAAGTGGCTGGGAGGATTTTTCTGCCCTACCTGAGGGAGCTCAGCCCTTTCAGTGGCTGACTTCTGAGGGGGGTATGATGAACGAGGGTGGGGGGGGGGCAGGTGCTCTGAACACTTCCAGTGTCCCTGTGTCTCCTGGGTGCATCATGGGGGCGTTGTCAACAGGTTCATTTCTGGAATGAGGTGGCCCTACAGACCTGTTTGTAGAGCCCACAGGTTCCAGAAAGGGCAGTAGTGAGTCAGGCTGTGTATCTCGATGGGAATGGCACAAAGTCCCAGGCGTACTCACAATACACACATCTTCTAAGCTGCCCCAGAGTTCTGCAATGCAGAGTTCAGGAAAATGAAGCCCAGGGGTGACCTCTAACAGGGAGGAACTCAAGACCCCACATACACGGCTCCTGGGCACTCTTTAAGGTGAGTTCTCCACATGGTTCTCCCTGACTAGCCGTTTCTGTCCTGAGTAGAAGGGAACTGTGGCATGCACCACACACAGACTGACTTAAGGGTCTGGCTGCCATGAAGGCCAATTTCCCTGCCAAGGTGAAATTGTACCGTCTTTCTCTTTTCATCCGTCAG
Seq C2 exon
GAGCCTGGTTCTGGAACGACGACCTAGAGGACCACGAGGAGGAAGATGATGAGGACTTCCTTGCTGAGATGGCAGAGGAGGAGAATGAGCCCCCCGGGCTGTGGTCTGCTGCCTATGGAGTGGGGGATGTGCCTGGGACTTGGGGCCCCGACGACTCAGATTCGGTGCAGACCCCAGAGGGTTGGGGACCCAACCCAGGCAGCCTTGGTATTCTGGCGGAGGAGGTTGAAGCAAAACATTTCCTGTCCGGTCGGGGGCCTGGGGAGAACTTTCTGGTGCCCTGGGCATTTCCCGCAGTGGCTGTCCCCATCGGATGTCCGGAGACCACTTGCGATGTGTGCGGCAAAGTGTTTCCTCACCGTTCGCGCCTGGCCAAGCACCAGCGCTACCACGCAGCGGTCAAGCCCTTCGGTTGTGAGGAGTGCGGCAAGGGCTTTGTGTACCGCTCGCACCTGGCCATCCACCAGCGCACGCATACCGGCGAGAAGCCCTTCCCGTGCCCGGACTGCGGCAAGCGCTTCGTCTACAAGTCACACCTGGTCACGCACCGGCGCATCCACACGGGCGAGCGGCCCTACCGCTGTGTCTTCTGCGGCGCGGGCTTCGGGCGGCGCTCCTACTTGGTGACCCATCAGCGCACTCACACGGGCGAGAGGCCCTACCCGTGCTTACACTGCGGCCGTAGCTTCAGCCAGAGCTCAGCGCTCGCCCGCCACCAGGCTGTACACACCGCTGACCGTCCTCACTGCTGCCCTGACTGTGGCCAGGCCTTCCGCCTGCGCGCCGACTTCCAGCGTCACCGGCGTGGTGGCGGCTGCACGGAACCCAGCAGCGGCGATGGCGCGCTTACCGCTCCACACGAGGTAGGGATGGCTCCCAACGAGGTGGAGATGGCAATCGCGGCCGTAGCCACGGCGGAACCCGAGGAACTGGAGTCCGGGCTCGCAGAGAAGAATGAAGAGCCCAAGGCTGGTGTGGCCGATGGAGACAATGAAGTTGAAGTCAGACAGGATGAGCAGGTGGTGGTCGCTGCGGCAGCAGAGGCGACTGTCCCCGACAGCAAGAAGGATCCTGAGCCAGACAGGAGGTTTCGTGAGATGGGCAACGGCCTGGCGGAGGGCGAAGGGCCTTCCTCGCACCGGTTCGGCTTCCATTTCCCCATGCACCCCAAGTCCTGGCTGCATCCGGACGGATTCCCCTTGCTGGGGTTCCCCGAGTTCTCTGAACGGCTGCAGACCGATGGGCGCCATCTGCCCGGTCCCCTGGGCGCCCCGCTATCCCTGCAGGGCATGGGGTTGGCTTGCGACCCGTTCCGTAGCGCGGGCCCCGGCGCCAGGGCGGATAGTGGCCTGCGAGCATTCGCGCCCGCCGTCGGCTCGTTGCTGTCGGAGCCGGCACCTGCCGCGCTGGCGGAGGAGGAGAGTCCGTGGATCTGCTCGGACTGCGGCAAGACGTTCGGGCGGCGCGCTGCGCTGGCTAAGCACCAGCGCTACCACGCGGGCGAGCGGCCCCACCGCTGCGCCGACTGCGGCAAGAGCTTCGTGTACGGCTCGCACCTGGCTCGGCACCGGCGCACGCACACGGGCGAGCGGCCCTTCCCGTGCCCGGAGTGCGGCGCTCGCTTCGCCCGCGGCTCGCACTTAGCGGCGCACGTGCGCGGCCACACGGGCGAGAAGCCGTTCGTTTGCGGCGTGTGCGGCGCGGGCTTCAGCCGACGCGCTCACCTCACGGCACACGGGCGCGCGCACACGGGCGAGCGGCCCTACGCGTGCGCCGAGTGCGGCCGGCGCTTCGGCCAGAGCGCGGCACTAACGCGGCACCAGTGGGCGCACGCCGAGGAGAAGCCGCACCGCTGCCCCGACTGCGGCAAGGGCTTCGGCCACAGCTCGGACTTCAAGCGGCACCGACGCACGCACACGGGCGAGAAGCCTTTCCGCTGTGCCGACTGCGGCCGTGGCTTCGCGCAGCGCTCCAACCTCGCCAAGCACCGGCGCGGCCACACGGGCGAGCGGCCCTTCCCCTGCCCAGAGTGCGGCAAGCGTTTCTCTCAGCGTTCCGTGCTCGTGACGCACCAGCGCACACACACAGGGGAGCGGCCGTACCTGTGCTCCAACTGCGGCCGGCGCTTCTCGCAGAGCTCGCACCTCCTCACGCACATGAAGACGCATCGCGGGCAGGGGGGCGCGCCAGCGCAGAACACCTCCGCCAAGGCCCAGGCGCCTGCCAAGGCAATACCGCCTCTGCCTCCATCGGGCTCGGGCTCCGGCGCTGGAACGCTGCTCGAGTTCGCCGGAGGAACCAGCTTCGGCTCCGATCCAGCGGCGTTCGCCAGCCCCTCGGGCACCTACGAGGAGAGCATCCTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001094:ENSRNOT00000052327:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=0.419
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]