HsaINT0187692 @ hg19
Intron Retention
Gene
ENSG00000196437 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:24737]
Coordinates
chr19:37916770-37917280:-
Coord C1 exon
chr19:37917154-37917280
Coord A exon
chr19:37916866-37917153
Coord C2 exon
chr19:37916770-37916865
Length
288 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
ATGTAACTTCCCTTTGACAGGCT
3' ss Score
6.92
Exon sequences
Seq C1 exon
GGAACAGTAACATTCAAAGATGTGGCTATCGACTTCACTCAGGAGGAGTGGAAGAGATTGGATCCTGCTCAGAGAAAACTGTACCGGAATGTGATGCTAGAAAACTATAACAACTTAATCACAGTAG
Seq A exon
GTAAGAGTAATTTACTATATAATTCAAACTCTGGAAAGAAAGTACCTTTTTTTTCCTCCCAGTGTTTCTGAAATACATGGACCTTTTAAATATTAGAGTGAGCTTGGCCTTGGGATGCTTTTGCTCATGTGAATGTCCATGCTGCAGTTTTCAGAGCAAAAGGGGACAGAACCCCCGAAGCCACATTTTCTTGTCCTTTAGCCTGGTTTTCCTGGGCCAGCCTCAATTTTTGGGTGGTTCTTTGTTCCTAGTATGTATGCCCAAATCTATGTAACTTCCCTTTGACAG
Seq C2 exon
GCTATCCGTTCACCAAACCTGATGTGATTTTCAAATTGGAGCAAGAAGAAGAACCATGGGTGATGGAGGAAGAAGTATTAAGGAGACACTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196437-ZNF569:NM_152484:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173211=DUF31=FE(24.1=100),PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0173211=DUF31=FE(18.4=100),PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAGTAACATTCAAAGATGTGGC
R:
TGCCAGTGTCTCCTTAATACTTCT
Band lengths:
221-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)