HsaALTA0009855-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000186017 | ZNF566
Description
zinc finger protein 566 [Source:HGNC Symbol;Acc:HGNC:25919]
Coordinates
chr19:36472991-36473458:-
Coord C1 exon
chr19:36473332-36473458
Coord A exon
NA
Coord C2 exon
chr19:36472991-36473006
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GTTACTTCTTTTGTAAGCAGGGC
3' ss Score
4.79
Exon sequences
Seq C1 exon
GAGTCAGTGATGTTCAGTGATGTGTCCGTAGACTTCTCTCAGGAGGAGTGGGAATGCCTGAATGATGATCAGAGAGATTTATACAGAGATGTGATGTTGGAGAATTACAGCAACCTGGTTTCAATGG
Seq A exon
NA
Seq C2 exon
GGCATTCTATTTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186017-9-5,9-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development