HsaEX1045239 @ hg38
Exon Skipping
Gene
ENSG00000186017 | ZNF566
Description
zinc finger protein 566 [Source:HGNC Symbol;Acc:HGNC:25919]
Coordinates
chr19:36443680-36473009:-
Coord C1 exon
chr19:36472911-36473009
Coord A exon
chr19:36449399-36450001
Coord C2 exon
chr19:36443680-36445626
Length
603 bp
Sequences
Splice sites
3' ss Seq
ACTTTCATATTTTCTTTCAGTCC
3' ss Score
10.13
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CAGGGCATTCTATTTCTAAACCAAATGTGATCTCCTACTTGGAGCAAGGGAAGGAGCCCTGGTTGGCTGACAGAGAGCTAACAAGAGGCCAGTGGCCAG
Seq A exon
TCCTGGAATCAAGATGTGAGACCAAGAAATTATTTCTGAAGAAAGAAATTTATGAAATAGAATCAACCCAGTGGGAAATAATGGAAAAACTCACAAGACGTGATTTTCAGTGCTCCAGTTTCAGAGATGATTGGGAATGTAATCGGCAGTTTAAGAAAGAACTCGGCTCTCAGGGGGGACATTTCAATCAATTGGTATTCACTCATGAAGATCTGCCCACTTTGAGTCACCATCCATCCTTCACATTACAGCAAATCATTAACAGTAAAAAGAAATTCTGTGCATCTAAAGAATATAGGAAAACCTTTAGACATGGCTCACAGTTTGCTACACATGAGATAATTCATACCATTGAGAAGCCTTATGAATGTAAGGAATGTGGAAAGTCCTTTAGACATCCCTCAAGACTCACTCATCATCAGAAAATTCATACTGGCAAGAAACCCTTTGAATGTAAGGAATGTGGAAAAACCTTTATTTGTGGCTCAGACCTTACTCGACATCACAGAATTCACACTGGTGAGAAACCCTATGAATGTAAGGAATGTGGGAAAGCCTTTAGTAGTGGTTCAAACTTCACTCGACATCAGAGAATTCACACAG
Seq C2 exon
GCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCTCCTCGGCCTCCCAAAGTGCTGGCATTATAGGCATGAGCCACCGCACCCGGCGTCATTTCCAGTGTTTTCTATGTTTCCTAGGAAGGTTTTGCTTCTGGAAGATTTCAGAGGGCAAGAGAATAAAGGAGTGGAGTGCAGTTTTTCATATATGTGATTCTGTGAGTGTGTATACACAGAGATTTAATATTTTAATACATCAGGAATTGATTATACGATCTAATGCAGGATGTCAGACTTGTTTCTATCCAGGAATAAAACCAGTTATGCCAGAAGTAACTATTATTCACCTTTCTCCTACTGAATTAAAATACTATCAGTTGTATATTAAATGCTCACATCTATTTCTGTTCTCCATATTCTAGCAATCCTTGACACTTTTCAATAGCTTTTATTACTTGGAAATAAAGATGTATGTATATATTATTAATATATAGTTTATTATTTGGAAATAAAGATGTTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186017_MULTIEX1-4/5=3-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
PF127602=Zn_Tnp_IS1595=WD(100=52.8),PF134651=zf-H2C2_2=WD(100=49.1)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTTGGAGCAAGGGAAGG
R:
AGAAACAAGTCTGACATCCTGCA
Band lengths:
346-949
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains