HsaALTD1053812-4/4 @ hg38
Alternative 5'ss
Gene
ENSG00000196458 | ZNF605
Description
zinc finger protein 605 [Source:HGNC Symbol;Acc:HGNC:28068]
Coordinates
chr12:132948148-132956343:-
Coord C1 exon
chr12:132956243-132956343
Coord A exon
chr12:132955762-132956242
Coord C2 exon
chr12:132948148-132948270
Length
481 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TTTTGGACATTTCTTTTCAGACT
3' ss Score
7.15
Exon sequences
Seq C1 exon
GAAGTGTAGTTCCAGCGCGAGCGGGACGCTGGGAAATGTAGTTCTGCGCGTTCACGTCCCCGATCGGGCCGTGTCCGCCGCGGCCCTGCGAGGTCCGAGGG
Seq A exon
GTAAGGGAGCGTGCAGCGGGGGCGGGACCACGAGGCGGCGGGGCTGGGGGCGGCCTCTGTGTCTGCGCCGGGGATCGCGGTGACCCCGCTGCGGACCGGCTCGCGGTGACCCCAGCGCGAACGAGCTGGCTGCCGGCTGGGGCGAGAAAGGCCTGCGGACCGGCCTGGGCGCATGCGCGGAAGGCGGGCCTCAGGCGGGGGCTCTGGGGGCGCGCGGGGGTGGGAGGCAGAGGGTGGGGTGGGGGCTGTAGGGCGGGCGGCGGCGGGGCGCTGAATGTGGGTGTCGGGGGAGATTTGGGGTCAGCTGGGCGATTCACTGGGGGCCTATGGAGGTCGCTGTAGACTTGGGGTGCAGCACGGGCGGGGCAAGGGGACGCGAGGTTGCCCTTGGCCCCAGGGGAGAGGGGCCCCTGGGAGGCCGTGTGGAGGATTTGTCTGCAGCGATTAGGACTCTGCTGATGAATGATTTGGATGCCTTTGG
Seq C2 exon
ACTCATTCTGATGAAGGAAAGAGCGTCCCTGTGCAGCTGCGTGTCCTTCAGTTCTTTGGCTCTGATTCCGTGTCTGGCTTCATCTAAGTGGCCTGGTCCATGGGCAGTGAAGAAATGTAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196458-0-1,1-1,2-1,4-1-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGTAGTTCCAGCGCGAG
R:
TTTACATTTCTTCACTGCCCATGGA
Band lengths:
222-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains