HsaEX0074024 @ hg38
Exon Skipping
Gene
ENSG00000196458 | ZNF605
Description
zinc finger protein 605 [Source:HGNC Symbol;Acc:HGNC:28068]
Coordinates
chr12:132945621-132956306:-
Coord C1 exon
chr12:132956252-132956306
Coord A exon
chr12:132948148-132948270
Coord C2 exon
chr12:132945621-132945797
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTGGACATTTCTTTTCAGACT
3' ss Score
7.15
5' ss Seq
AGTGTGAGC
5' ss Score
3.73
Exon sequences
Seq C1 exon
GTAGTTCTGCGCGTTCACGTCCCCGATCGGGCCGTGTCCGCCGCGGCCCTGCGAG
Seq A exon
ACTCATTCTGATGAAGGAAAGAGCGTCCCTGTGCAGCTGCGTGTCCTTCAGTTCTTTGGCTCTGATTCCGTGTCTGGCTTCATCTAAGTGGCCTGGTCCATGGGCAGTGAAGAAATGTAAAGT
Seq C2 exon
GCAATAGCCCTCTGGAACAAGACAATTCATGTGAGATAAGAAAGAAGAGCCCACAAGACCAAGGATGTATTCTCAGTTTACAGACCACTGACCAGAGGCCACTCCAGGGTGTCAGGACTAAGAGAAGTCACAAAACAGCAGATTTCCCAAGAGCAGCGGAAAATGATCCAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196458_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.250
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTTCTGCGCGTTCACGTC
R:
ACTGGATCATTTTCCGCTGCT
Band lengths:
226-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development