HsaEX0074024 @ hg19
Exon Skipping
Gene
ENSG00000196458 | ZNF605
Description
zinc finger protein 605 [Source:HGNC Symbol;Acc:28068]
Coordinates
chr12:133522207-133532892:-
Coord C1 exon
chr12:133532829-133532892
Coord A exon
chr12:133524734-133524856
Coord C2 exon
chr12:133522207-133522383
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTGGACATTTCTTTTCAGACT
3' ss Score
7.15
5' ss Seq
AGTGTGAGC
5' ss Score
3.73
Exon sequences
Seq C1 exon
GTAGTTCTGCGCGTTCACGTCCCCGATCGGGCCGTGTCCGCCGCGGCCCTGCGAGGTCCGAGGG
Seq A exon
ACTCATTCTGATGAAGGAAAGAGCGTCCCTGTGCAGCTGCGTGTCCTTCAGTTCTTTGGCTCTGATTCCGTGTCTGGCTTCATCTAAGTGGCCTGGTCCATGGGCAGTGAAGAAATGTAAAGT
Seq C2 exon
GCAATAGCCCTCTGGAACAAGACAATTCATGTGAGATAAGAAAGAAGAGCCCACAAGACCAAGGATGTATTCTCAGTTTACAGACCACTGACCAGAGGCCACTCCAGGGTGTCAGGACTAAGAGAAGTCACAAAACAGCAGATTTCCCAAGAGCAGCGGAAAATGATCCAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196458_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTTCTGCGCGTTCACGTC
R:
ACTGGATCATTTTCCGCTGCT
Band lengths:
235-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)