HsaALTD1053818-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000188295 | ZNF669
Description
zinc finger protein 669 [Source:HGNC Symbol;Acc:HGNC:25736]
Coordinates
chr1:247101987-247104297:-
Coord C1 exon
chr1:247104197-247104297
Coord A exon
chr1:247103939-247104196
Coord C2 exon
chr1:247101987-247102113
Length
258 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
3' ss Seq
ACATGTGTGGAATGTTCTAGGAC
3' ss Score
6.92
Exon sequences
Seq C1 exon
GGGAGGCCCAGGTGGCTCTGCAGCAGCCTCTGCCACCCTGTGACCTGCGAGTATTGGGACATCCCTAGCTGACGCCAGGACACCCGGGAAGCCGAGGAATG
Seq A exon
GTGAGTGGACTGCGCCTGGCTTCCCGAAGTGGAGAAGAGGGCTGGTTGAAACCTGCTGTGGCGCGACTCGGGCCTCCACGCCATCGGCTCCGGAACCTGCGGACCGAGTCGCCGTGGCGTAGCCGGGGCTCAGTCCTCTTCTGTTCAGGGCCGGGCCGGGCGGGGCGGGCAGCGGAACCCCTGCATCCTGTCTGTACCTGCGGGCGCCACTTCCGCCGGCCGGAGCCCTGTCGGGAACCCCTCGCCTCCCCTATCCAG
Seq C2 exon
GACTCGGTGGCTTTTGAGGATGTGGCTGTGAACTTTACCCAGGAGGAATGGGCTTTGCTAGATTCTTCTCAGAAGAATCTCTACAGAGAAGTGATGCAGGAAACCTGCAGGAACCTGGCTTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188295-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGCAGCAGCCTCTG
R:
CTACAGAAGCCAGGTTCCTGC
Band lengths:
214-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains