HsaINT0188056 @ hg38
Intron Retention
Gene
ENSG00000188295 | ZNF669
Description
zinc finger protein 669 [Source:HGNC Symbol;Acc:HGNC:25736]
Coordinates
chr1:247101987-247104372:-
Coord C1 exon
chr1:247103939-247104372
Coord A exon
chr1:247102114-247103938
Coord C2 exon
chr1:247101987-247102113
Length
1825 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
3' ss Seq
ACATGTGTGGAATGTTCTAGGAC
3' ss Score
6.92
Exon sequences
Seq C1 exon
GCCTGGCGGTTGCTTTGTCTCTCCTTCGCCGGAGCCGGCTCTTCCTGTTAGTCTCCGCTGCTAGTTCTTGGCTCTGGGAGGCCCAGGTGGCTCTGCAGCAGCCTCTGCCACCCTGTGACCTGCGAGTATTGGGACATCCCTAGCTGACGCCAGGACACCCGGGAAGCCGAGGAATGGTGAGTGGACTGCGCCTGGCTTCCCGAAGTGGAGAAGAGGGCTGGTTGAAACCTGCTGTGGCGCGACTCGGGCCTCCACGCCATCGGCTCCGGAACCTGCGGACCGAGTCGCCGTGGCGTAGCCGGGGCTCAGTCCTCTTCTGTTCAGGGCCGGGCCGGGCGGGGCGGGCAGCGGAACCCCTGCATCCTGTCTGTACCTGCGGGCGCCACTTCCGCCGGCCGGAGCCCTGTCGGGAACCCCTCGCCTCCCCTATCCAG
Seq A exon
GTAGTGTGGTGACCACGGGAGGGTGATGCGGGAGAGCCCCGACTCGGTGTCTCGGTGTGCGGGGTTCCAGCATGGGAGGAGCTGTGGTTCATGGGGCTTCCAGTCCCACCTTTCTTCCCCTAAAATTAAGCCGAGGCTTTGTTAAAACGTTAAACCGTGTGTTTGAGCAAACGGCGATTCATAAACCAGGTACCGCAGTCATGGTTTGTGGTTTGGGGTCCACAGAAGGGGCGTAAATGAGAGGCTTTGATAAGGTTAATGAGGAAGCAAACCATATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGACGGAATCTCGCCCTGTCGCCAGGCTGGAGTGCAATGATGCAGTCTCACTCATTGCAACCTCTGACTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGTTGGGATTACAGGCGCCCGCCACCACGCCCAGCTAATTTTTGTATTTTTGGTAGAGACAGGGTTTCGCCATGTTGGCTAGGTTGGTCTCGAACTCCTGACCTTAAGTGATCCGCCCGTCTCGGCCTCCTAAAGCGCTGAGATTACAGGCGTGAGCCACCGCGCTCGGCCAAAATATTTTTCTGTTTACAAACATTTTACATGAGAGGAAAGCGGAGAATAAACCATCTGACACTCTACTGTAAAAAAATCTTTGTGCCTCTCTTCATCTTTCCTAAGTGTGCATATTACCAAAATGTCTTTAGGTTGATGTCCCCCTGTGAAAACTTTACAGGGTGTTGTGTCCTCAGCCCTTGGTCTGCTTGCTCATCTCTCTGCTAATACTGTGCTGTCCTGAATATTTTTGGTTGAAAATCTTAAAAGTATGTTAGGCAAGACATAACTCTTTTTTTAGATGACTGAAAATCATTAGACATTTGTCATTTTTACTAGGTATGAAAAACTAGTTTTTCTTGCCTAAAAAAGCCTGATTTGGGAATTTATGTGATTTCACAGGAATAGCATCTGGAAGTGGTGACATTAATGTCATTTTAAAAAACATGTGCCATATTTCCTCTTATTCCATTCTGCCTTGACATTGTGCAATAGAAATTTAAAAATTGTATTAGTAAATTGTTAAATATCAATTATTGGTTTTATTTACTACTCAATTAAATTTAATAAGCCTATTCTCTCTTGGTGTAATCACATGGAATGGGCTCAACTCCCCAATTAACAAGTGACAGCACATATAAAATATTGTCTACCAGGGAAACTCATTAAACACTTAGTGTTCAGACTGTGTTTTGGTGTCTGGTTCCCTAAGCACCACTGCAGTGACACAAAATAATAGACCTTTAGCAGAAAAAGTTTTGGCAACTATATTGCATAAACCATTTAGATGCAGTGAGTCATTCTTATTACTTAGGTTGGTGGAATCCCTTTCAAAATGTAAGTTACTAATACAAACAAAGATTGAACTTTGTGAGCAGGCATTTTTAAGAATAAGTAGTCTTAGGACTGATATTATTAACTCACTTATGCACATCAGGTAGGACTTTATTATGGCAGATACTAGAAATGTACGAAGTGAAATTAAGAGGTAACCTAGCAGCACATCTTACTCCCTGGATTCTCTAATGAGATGGGTATTTCCACTTTGCTGTTGCCTTTTTGAATAGTTCAATTCTAGCATTAGTACTGCTGTGTGGGAGGGAGTATGTGTGAACAGAGTAAGAGTTGTGACAATCAAGTCATAGAATAAATGCTTGGAAATTATCAAATCATGTAAACAGCTTATGAATTGAGTATAGATTCCCAGTGCTGTCAGTCTCACCCATCCTTCTATCCACATGTGTGGAATGTTCTAG
Seq C2 exon
GACTCGGTGGCTTTTGAGGATGTGGCTGTGAACTTTACCCAGGAGGAATGGGCTTTGCTAGATTCTTCTCAGAAGAATCTCTACAGAGAAGTGATGCAGGAAACCTGCAGGAACCTGGCTTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188295:ENST00000343381:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTGCGAGTATTGGGACA
R:
CACATCCTCAAAAGCCACCGA
Band lengths:
343-2168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains