HsaALTD1053824-4/4 @ hg38
Alternative 5'ss
Gene
ENSG00000187792 | ZNF70
Description
zinc finger protein 70 [Source:HGNC Symbol;Acc:HGNC:13140]
Coordinates
chr22:23738678-23751148:-
Coord C1 exon
chr22:23751048-23751148
Coord A exon
chr22:23750711-23751047
Coord C2 exon
chr22:23738678-23745219
Length
337 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
3' ss Seq
GTTCCCTGTTTTCTTTTCAGATT
3' ss Score
12.52
Exon sequences
Seq C1 exon
GGCGGGGCTCTGGGTGCTCGGGCGGCCGCGGGCTCCGCGTCAGCAGCTGCTGTGGAGCCAGGCAGCGTCGGCCGCGTCGGCCGCGGGTTGGAGCAGCTCAG
Seq A exon
GTGCGGCCCCGCCCCGCCCGCCTGCGGCCCCGCCCCGGCCCAGGTGAGCTGCCCCGCCCCGGCCCAGGTGAGTGGCCCCGCGTCCGCCGGTGTGACCTGAGTCCGCCTGACCACCTGTCCCTCCGGTGGCCCTGGGTGTGCGTGTCCCCAATCGCGGGGAAGCCTGTAGGGGCGCCACGTCGCCGCCTGGGCAGCGTGTGCGGGTCCGTGGCAACTCTTGGGCCCCCAGCCAGGAAACCTTGACTGCACTAAGAGTTTGCAGGGTGCCCAGGCCCTAGGGACTCTCTGGAGGATGGGATGACAGATGCAGGAGGACCCGGAGAAGGCCCCGACAGAG
Seq C2 exon
ATTGTGAGAACAGTAAGTGTGGCCCAAAGAAGAACATTTTTAAAGAAATACAACCATTGGGGATGATAGCAGATTCACAATGGAGGTTCCCCCAGCAACAAAGTTTGGTGAGACCTTTGCATTTGAGAACAGGTTAGAGTCACAACAAGGGCTTTTCCCAGGGGAGGACCTGGGGGACCCTTTTCTTCAGGAAAGAGGTTTGGAGCAAATGGCTGTGATCTACAAGGAGATCCCTCTTGGTGAGCAGGACGAAGAAAATGATGATTACGAGGGGAATTTCAGTTTGTGCTCAAGCCCTGTTCAGCATCAAAGTATCCCCCCAGGAACCAGACCCCAGGATGATGAGCTCTTCGGACAAACCTTCCTCCAGAAATCCGACCTCAGCATGTGTCAGATAATCCACAGTGAAGAGCCCAGTCCATGCGATTGTGCAGAAACAGACAGAGGGGACTCAGGACCTAACGCACCTCACAGAACCCCACAACCAGCCAAGCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187792-0-1,1-1,2-1,3-1-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTTGGAGCAGCTCAG
R:
ATCCTGGGGTCTGGTTCCTG
Band lengths:
358-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains