HsaEX0074221 @ hg38
Exon Skipping
Gene
ENSG00000187792 | ZNF70
Description
zinc finger protein 70 [Source:HGNC Symbol;Acc:HGNC:13140]
Coordinates
chr22:23738678-23751092:-
Coord C1 exon
chr22:23750711-23751092
Coord A exon
chr22:23745380-23745604
Coord C2 exon
chr22:23738678-23745219
Length
225 bp
Sequences
Splice sites
3' ss Seq
TAATTGTTTTGTATTTTTAGTGG
3' ss Score
5.98
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GCCAGGCAGCGTCGGCCGCGTCGGCCGCGGGTTGGAGCAGCTCAGGTGCGGCCCCGCCCCGCCCGCCTGCGGCCCCGCCCCGGCCCAGGTGAGCTGCCCCGCCCCGGCCCAGGTGAGTGGCCCCGCGTCCGCCGGTGTGACCTGAGTCCGCCTGACCACCTGTCCCTCCGGTGGCCCTGGGTGTGCGTGTCCCCAATCGCGGGGAAGCCTGTAGGGGCGCCACGTCGCCGCCTGGGCAGCGTGTGCGGGTCCGTGGCAACTCTTGGGCCCCCAGCCAGGAAACCTTGACTGCACTAAGAGTTTGCAGGGTGCCCAGGCCCTAGGGACTCTCTGGAGGATGGGATGACAGATGCAGGAGGACCCGGAGAAGGCCCCGACAGAG
Seq A exon
TGGAGACCGGGTTTCACCATGTGACCAGGCTGGTTTTGAACTCCTGACCTCAAGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTAGGATTATAGGTGTGAGCCACCGCACCCAGCCCCCACTTCCTGTTTTAGCTCACCTTTCTGAACACCTTCAGCCCGTTGAGTCTAGACACCATGATGTGGCACTTGATTGTGTCTGTCTGTCTGCCTTCAATTGTCTCTG
Seq C2 exon
ATTGTGAGAACAGTAAGTGTGGCCCAAAGAAGAACATTTTTAAAGAAATACAACCATTGGGGATGATAGCAGATTCACAATGGAGGTTCCCCCAGCAACAAAGTTTGGTGAGACCTTTGCATTTGAGAACAGGTTAGAGTCACAACAAGGGCTTTTCCCAGGGGAGGACCTGGGGGACCCTTTTCTTCAGGAAAGAGGTTTGGAGCAAATGGCTGTGATCTACAAGGAGATCCCTCTTGGTGAGCAGGACGAAGAAAATGATGATTACGAGGGGAATTTCAGTTTGTGCTCAAGCCCTGTTCAGCATCAAAGTATCCCCCCAGGAACCAGACCCCAGGATGATGAGCTCTTCGGACAAACCTTCCTCCAGAAATCCGACCTCAGCATGTGTCAGATAATCCACAGTGAAGAGCCCAGTCCATGCGATTGTGCAGAAACAGACAGAGGGGACTCAGGACCTAACGCACCTCACAGAACCCCACAACCAGCCAAGCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187792-'3-1,'3-0,4-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGACAGATGCAGGAGGA
R:
TCTTCGTCCTGCTCACCAAGA
Band lengths:
298-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development