HsaALTD1053834-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000180257 | ZNF816
Description
zinc finger protein 816 [Source:HGNC Symbol;Acc:HGNC:26995]
Coordinates
chr19:52960027-52962827:-
Coord C1 exon
chr19:52962727-52962827
Coord A exon
NA
Coord C2 exon
chr19:52960027-52960177
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
TCGCATTGTGCTGTCGGCAGGTA
3' ss Score
7.47
Exon sequences
Seq C1 exon
TCCTAGTTGTCTGGTGCTGCTATATAGGGGACGTGGGGTCCCCACAGACCTGCAGGTTCCGGCCCCTCTTTTCTCAACCCAGAGCAAATTGAAACGTCCGG
Seq A exon
NA
Seq C2 exon
GTAACACACCGCTGTGCCACGGTTTTGGCGAGGGCTGACAATTGTGAGCTGTAGAAGTACCAGCCTAACAACTGTTCAAGTGACTCCTGACCTAGATGGGTGGTTTCATGCACCTCCAGTACAACTGTGGCTCCTAGCAGCTGTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180257-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCTCTTTTCTCAACCCAG
R:
ACAGCTCACAATTGTCAGCCC
Band lengths:
92-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains