HsaEX0074402 @ hg38
Exon Skipping
Gene
ENSG00000180257 | ZNF816
Description
zinc finger protein 816 [Source:HGNC Symbol;Acc:HGNC:26995]
Coordinates
chr19:52956552-52962823:-
Coord C1 exon
chr19:52962717-52962823
Coord A exon
chr19:52960027-52960177
Coord C2 exon
chr19:52956552-52956652
Length
151 bp
Sequences
Splice sites
3' ss Seq
TCGCATTGTGCTGTCGGCAGGTA
3' ss Score
7.47
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGTTGTCTGGTGCTGCTATATAGGGGACGTGGGGTCCCCACAGACCTGCAGGTTCCGGCCCCTCTTTTCTCAACCCAGAGCAAATTGAAACGTCCGGGTGAGAGTCC
Seq A exon
GTAACACACCGCTGTGCCACGGTTTTGGCGAGGGCTGACAATTGTGAGCTGTAGAAGTACCAGCCTAACAACTGTTCAAGTGACTCCTGACCTAGATGGGTGGTTTCATGCACCTCCAGTACAACTGTGGCTCCTAGCAGCTGTGGCACAG
Seq C2 exon
AGATGGGCTTTCGCCATGTTGCTCAGGCTGGTGTCCAACCCCAGAGCTGAAGGGATCCAGCTGCATCGGCCTCCCAAAATGCTGGGATTACAGGCATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180257-'1-1,'1-0,2-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGTGCTGCTATATAGGGGA
R:
GCATGCCTGTAATCCCAGCAT
Band lengths:
202-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development