HsaALTD1053891-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000075407 | ZNF37A
Description
zinc finger protein 37A [Source:HGNC Symbol;Acc:HGNC:13102]
Coordinates
chr10:38095538-38095804:+
Coord C1 exon
chr10:38095538-38095629
Coord A exon
chr10:38095630-38095633
Coord C2 exon
chr10:38095744-38095804
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
GACACATTTTGTTGTGGCAGAGT
3' ss Score
5.41
Exon sequences
Seq C1 exon
ATGCTGAGCTGCTGGCGCACTGCAGCACAACTAGAGATGTACGGATGCCCCCATCTTGATCTTACAGAATCAGAGGTACAGCCGCGAGAAAG
Seq A exon
GTCT
Seq C2 exon
AGTCAAGAACAGACAGAGTCGCTTGAGGACTCAGGAGGGTGTTTGCTGCGTTGACAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075407-3-3,4-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGATGCCCCCATCTTGAT
R:
CAGCAAACACCCTCCTGAGTC
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains