HsaINT1047838 @ hg38
Intron Retention
Gene
ENSG00000075407 | ZNF37A
Description
zinc finger protein 37A [Source:HGNC Symbol;Acc:HGNC:13102]
Coordinates
chr10:38095538-38095804:+
Coord C1 exon
chr10:38095538-38095633
Coord A exon
chr10:38095634-38095743
Coord C2 exon
chr10:38095744-38095804
Length
110 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
GACACATTTTGTTGTGGCAGAGT
3' ss Score
5.41
Exon sequences
Seq C1 exon
ATGCTGAGCTGCTGGCGCACTGCAGCACAACTAGAGATGTACGGATGCCCCCATCTTGATCTTACAGAATCAGAGGTACAGCCGCGAGAAAGGTCT
Seq A exon
GTAAGTTATCTATTTACGCTTTATTTAAAAGATGGGATGGGGTGGGGTGGACAGGAAACGAGCTTAACGTGTTAAGTTACTGATGACATTGACACATTTTGTTGTGGCAG
Seq C2 exon
AGTCAAGAACAGACAGAGTCGCTTGAGGACTCAGGAGGGTGTTTGCTGCGTTGACAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075407:ENST00000361085:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCAGCACAACTAGAGA
R:
TGTTGTCAACGCAGCAAACAC
Band lengths:
139-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains