HsaALTD1054210-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000197062 | ZSCAN26
Description
zinc finger and SCAN domain containing 26 [Source:HGNC Symbol;Acc:HGNC:12978]
Coordinates
chr6:28272084-28272787:+
Coord C1 exon
chr6:28272084-28272336
Coord A exon
NA
Coord C2 exon
chr6:28272670-28272787
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGTA
5' ss Score
0.39
3' ss Seq
ATATACCTAATTGTCCCTAGGAC
3' ss Score
8.51
Exon sequences
Seq C1 exon
GCAGTTGCGTTATGAAGAGACCACAGGACCTCGAGAAGCACTAAGTCGGCTCCGGGAGCTCTGTCAACAGTGGCTACAGCCCGAGACCCATACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTTCTGATCATCCTGCCTAAGGAGCTCCAGGCCCGGGTGCAGGAGCATCACCCAGAGAGCAGGGAGGACGTGGTTGTTGTTCTGGAGGATTTGCAGCTGGATCTTGGAGAAACAGGACAACAG
Seq A exon
NA
Seq C2 exon
GACCCAGACCAGCCAAAGAAACAAAAAATACTTGTGGAGGAGATGGCCCCTCTGAAAGGAGTACAGGAACAGCAGGTTCGGCATGAGTGTGAAGTTACAAAGCCTGAGAAAGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197062-8-5,9-5,10-5-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.887
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.6)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGTTGTTGTTCTGGAGG
R:
GGGCCATCTCCTCCACAAGTA
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains