HsaINT0186373 @ hg38
Intron Retention
Gene
ENSG00000197062 | ZSCAN26
Description
zinc finger and SCAN domain containing 26 [Source:HGNC Symbol;Acc:HGNC:12978]
Coordinates
chr6:28271854-28272787:+
Coord C1 exon
chr6:28271854-28272339
Coord A exon
chr6:28272340-28272669
Coord C2 exon
chr6:28272670-28272787
Length
330 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
ATATACCTAATTGTCCCTAGGAC
3' ss Score
8.51
Exon sequences
Seq C1 exon
GAGTGTCTCTGAAGATACAGTCCAAAGAAAGTTCTCCAAAACAAGGAGAACAGTCTGAAGCTGGGGATGGCAACAGCATTGGTGAGTGCCCATTCCCTGGCTCCCCTGAATCTGAAGAAGGAGGGGCTTCGGGTAGTGAGGGAGGATCACTACTCTACTTGGGAACAGGGATTCAAGCTGCAAGGAAACAGTAAAGGCCTTGGACAGGAGCCATTGTGCAAACAATTCAGGCAGTTGCGTTATGAAGAGACCACAGGACCTCGAGAAGCACTAAGTCGGCTCCGGGAGCTCTGTCAACAGTGGCTACAGCCCGAGACCCATACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTTCTGATCATCCTGCCTAAGGAGCTCCAGGCCCGGGTGCAGGAGCATCACCCAGAGAGCAGGGAGGACGTGGTTGTTGTTCTGGAGGATTTGCAGCTGGATCTTGGAGAAACAGGACAACAGGTG
Seq A exon
GTAAGGGTCAGATGTGCTCTTTTTCAGGAATGCAGGAATTGAGATCTCTGGCCAGACAGGTGGACATGGGCTCATCAGCGGAAGGAGAATTACTAAGCTTTGATTCAGTTTTTTTCCAGTCTAGCTGTTAATTTCCTTAGGTCTTACCTCAACCTTACCTGGCCCTTGCTTGGAGAAAACTGAATGTGCACCAGATTCCCCATCTTCTTTTCTTTGCCCCTCTGGGGTTTCTCTTTCTTCTCTTTTTTAACACCTAGGTGTTTTACTGAACAGCAGTTTCCTAAACCCACATATATCTAATTATGCCTCCATATACCTAATTGTCCCTAG
Seq C2 exon
GACCCAGACCAGCCAAAGAAACAAAAAATACTTGTGGAGGAGATGGCCCCTCTGAAAGGAGTACAGGAACAGCAGGTTCGGCATGAGTGTGAAGTTACAAAGCCTGAGAAAGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197062:ENST00000619937:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=NA C2=0.887
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.6)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGCCATTGTGCAAACA
R:
TCCTTTCAGAGGGGCCATCTC
Band lengths:
343-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains