BtaINT0166412 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031869 | ZSCAN26
Description
zinc finger and SCAN domain containing 26 [Source:HGNC Symbol;Acc:HGNC:12978]
Coordinates
chr23:30165486-30166394:-
Coord C1 exon
chr23:30165913-30166394
Coord A exon
chr23:30165604-30165912
Coord C2 exon
chr23:30165486-30165603
Length
309 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GTGTACCTAATCATCCCTAGGAC
3' ss Score
8.58
Exon sequences
Seq C1 exon
GGGTATCCCTGAGGAGGCAGTCAAAAGAAAGTTGCCCCAAATAGAGCAGTCTGAAGGTGGGGATGGCGATAGCATGGGGAACCGTTCCTTCCCTGGCTCCTGTGAACCTGAAGAAGGAGGGGCTTCAGGTGGTAAAGGAGGATCACCTCTCTGCTCGGGAACAGGGAGTCAAGCTTCAGGGAAACGGCACAGGCTTCAGGCAGGAGCCCCTGTGTAAGCGGTTCAGGCAGTTGCGCTATGAAGAGACCACAGGACCTCGAGAGGCCCTGAGCCGGCTCCGGGAACTCTGCCGACAATGGCTACAGCCTGAGACCCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCTGAGGAGCTTCAGGCCCGGTTGCGGGAGCATCACCTGGAGAGCGGGGAAGATGCGGTGGTTTTCCTGGAGGATTTGCAGCTGGAGCTGGGAGGAACAGGACAACAGGAG
Seq A exon
GTAAGGGTCAGGTGTCCCCCTTTGCAAGAAAGCAGGAGTTGACACACTGGGCCAGAGCTGTAGCCATGACTTCAGCAGTGGAAGAACTGCTCAGCTTGGGTTCCGTTTCTTTGTAGTCTGGTTGTTTCTTGCTGAAGCTCTTACCTCAGCCACCCTGCCTCTGCTGGGAGGAAACTGAATGTACTCCAGGCTCTCCAGCCTCTTTTCTTTGCCTTTCTGTGGTTTCTCTTCACTTCCTTTTCTAAACATTGAAGTGTTTTTCTGAACAGCAGTTTCCGCCTAAACCCACGTGTACCTAATCATCCCTAG
Seq C2 exon
GACCCAAACCAGGCAAAGAAACAGGAAGTGCTCATGGAGAAGACAGCCCCTGGAAAAGCCACGCCAGAGCGGCAGGTCCAACCTGAAGGTGACGTTCCACAGCCCGAGAGAGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031869:ENSBTAT00000035587:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=WD(100=68.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGACCACAGGACCTCGAG
R:
CTGTGGAACGTCACCTTCAGG
Band lengths:
344-653
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]