MmuINT0178703 @ mm9
Intron Retention
Gene
ENSMUSG00000022228 | Zfp187
Description
zinc finger protein 187 [Source:MGI Symbol;Acc:MGI:3531417]
Coordinates
chr13:21539655-21541385:-
Coord C1 exon
chr13:21541310-21541385
Coord A exon
chr13:21539764-21541309
Coord C2 exon
chr13:21539655-21539763
Length
1546 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTATCTGTACTTATCTCTAGGAC
3' ss Score
10.77
Exon sequences
Seq C1 exon
GAGTGTCTCTCAGGATACAGTCAAGAGAAAAGTCTCCAAAACAGAGTGCCTGAAGCAAGGGATGGCACTGGCCTTG
Seq A exon
GTGAGTGCGTGTTCATCATCTTTCCTTTTTTTTTCTTTTTAACTTCTTTGAGAGTTTTCAACAACATGTTCTGATCATATTCTGTTCCCACACATACCTCTTCCCAGATCCACCCTAGCAAGCGTGCATACTCTTTGGCTCCCCTGAATCTGAAGGAGGAGCTTCAGGTAATGAGAGAACCACTGTTGTTCATGGTGTCAGAGGTCTGGCCTGGGGGGGTCCTAACAGACTAAATTTAGCGACTTGTCGCTCAGTCCAATGAGAGAGACGATTGGTAGTGAAGCAAGATAAGAATCAGTTATTTAGCAAGTCCATGTTGGGAAGAAACAGGAAAACAGTGCCCTGACTCAGAATTAAATGGGGGAAAGGACAAGAGCCGAGGTGAAGGGGAGCAAATAGCAGTCCTTGTCAGTCTGTCTTGGACAGACTGGTCAGTCAGTATTTCGTGCTGGTTCTGTAAAGTCCTGATCCCTCCAGCAAAGTCATTACTGCTGAGGCAGCCAGTGCTGGCCAGTGGATCCCATTATGGGTGATCTGTCTGCAGAGTTCTTGGGGTCATGAAAATAACTTATTCTTATCTTGGTGACATTAGCCTTAAAAGGGAACTAGAAGCTGTGTGTAGTGGTATAGGACTTTAATCCCAGCACTCAGTAACAGGTAGATCTCTGTGAGGCCAGCTTGGTATATTTGGTACCAAGTTCCAGGCCAGTTACAGCCACATAGTAAGAGCCTGTCTCAAAAGAAAAGAGGAGTGGGGCTACTAGCAAGGCTAGGGAAATTAGGGACTATCAAGCTTTGTTCGCCAGTTGTCAGAGAGACAGTTCTTGAATGATTAGGATATATGTGCAGAGTTGAGTAGAAATCTGACTTTAAAGTTTAAGGTAGCTAAGGAGACATAGTTGTAGATCCAAGTCTGTGCTTTAAGCCACTGTTAAAACTACTGTGCTTGGGAACAGGGATTCAAAGTTCAAGGGGACAGAAAAGGCGTTGGGCAGGAGCCATTGTGCAAACAGTTCAGGCAGCTGCGCTATGAGGAAAGCACTGGACCTCGAGAGGTTTTACGCCGGCTCAGGGAGCTCTGCAGACAGTGGCTGCGGCCTGAGACCCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTACTGGAGCAGTTCCTGACCATCCTGCCAAGAGATCTGCAGGTCCAGGTGCTCGAGCACCACCCAGAGACTGGGGAGGAACTGGTGGGAATACTGGAAGATTTGCAGCTGGACCGTGGAAAAGCAGGAGAGCAGAAGGTAAGGGGTGCAGGTGCCCATTTGCAGGAAAGTAAGAAGTGAGCCCCCAGGTCACATAGGCGGACATGAGCACAGCAGCGGGCGGGGCACTGCTCACTGCTGGTCAGTGTGGGCCTCGCCTCACCCTTGCCATCCCCGGTGAGGCTGAAGTGTAAGGAGGCTCTCCGTTCTGCCTCTTCTTAGCCTCTTGAAAGGTTTCTTTGTTCTCTTTTCTGACATTGAAGTGGTTTTTTTTGTAAACCGGTTTCCTAATTATCTGTACTTATCTCTAG
Seq C2 exon
GACTCAGCCCAAAGAAGCAGACCAACGGTGCTGGTTGGCGAGCCAGCCCCTCGCAGGGAAGCACGGGAGCAGCCTGGGTGTGCGCTTCCTCAGAAGCCTGAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022228-Zfp187:NM_001013786:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTCTCTCAGGATACAGTCA
R:
CTCTCTCCTCAGGCTTCTGA
Band lengths:
185-1731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: