HsaINT0186373 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr6:28239632-28240564:+
Coord C1 exon
chr6:28239632-28240116
Coord A exon
chr6:28240117-28240446
Coord C2 exon
chr6:28240447-28240564
Length
330 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
ATATACCTAATTGTCCCTAGGAC
3' ss Score
8.51
Exon sequences
Seq C1 exon
GAGTGTCTCTGAAGATACAGTCCAAAGAAAGTTCTCCAAAACAAGGAGAACAGTCTGAAGCTGGGGATGGCAACAGCATTGGTGAGTGCCCATTCCCTGGCTCCCCTGAATCTGAAGAAGGAGGGGCTTCGGGTAGTGAGGGAGGATCACTACTCTACTTGGGAACAGGGATTCAAGCTGCAAGGAAACAGTAAAGGCCTTGGACAGGAGCCATTGTGCAAACAATTCAGGCAGTTGCGTTATGAAGAGACCACAGGACCTCGAGAAGCACTAAGTCGGCTCCGGGAGCTCTGTCAACAGTGCTACAGCCCGAGACCCATACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTTCTGATCATCCTGCCTAAGGAGCTCCAGGCCCGGGTGCAGGAGCATCACCCAGAGAGCAGGGAGGACGTGGTTGTTGTTCTGGAGGATTTGCAGCTGGATCTTGGAGAAACAGGACAACAGGTG
Seq A exon
GTAAGGGTCAGATGTGCTCTTTTTCAGGAATGCAGGAATTGAGATCTCTGGCCAGACAGGTGGACATGGGCTCATCAGCGGAAGGAGAATTACTAAGCTTTGATTCAGTTTTTTTCCAGTCTAGCTGTTAATTTCCTTAGGTCTTACCTCAACCTTACCTGGCCCTTGCTTGGAGAAAACTGAATGTGCACCAGATTCCCCATCTTCTTTTCTTTGCCCCTCTGGGGTTTCTCTTTCTTCTCTTTTTTAACACCTAGGTGTTTTACTGAACAGCAGTTTCCTAAACCCACATATATCTAATTATGCCTCCATATACCTAATTGTCCCTAG
Seq C2 exon
GACCCAGACCAGCCAAAGAAACAAAAAATACTTGTGGAGGAGATGGCCCCTCTGAAAGGAGTACAGGAACAGCAGGTTCGGCATGAGTGTGAAGTTACAAAGCCTGAGAAAGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
-ZNF187:NM_001023560:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGCCATTGTGCAAACA
R:
TCCTTTCAGAGGGGCCATCTC
Band lengths:
342-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)