RnoINT0169490 @ rn6
Intron Retention
Gene
ENSRNOG00000053518 | Zscan26
Description
zinc finger and SCAN domain containing 26 [Source:RGD Symbol;Acc:727885]
Coordinates
chr17:45201011-45201705:+
Coord C1 exon
chr17:45201011-45201328
Coord A exon
chr17:45201329-45201599
Coord C2 exon
chr17:45201600-45201705
Length
271 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTATCTGTACTTATCTCTAGGAC
3' ss Score
10.77
Exon sequences
Seq C1 exon
GGATTCAAAGTTCAAGGGGACAGAAAAGGCGTTGGGCAGGAGCCATTGTGCAAACAGTTCAGGCAGCTGCGCTATGAGGAAAGCACTGGACCTCGAGAGGTTTTACGCCGACTCAGGGAGCTCTGCAGACAGTGGCTGCGGCCTGAGACCCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTACTGGAGCAGTTCTTGACCATCCTGCCAAGAGATCTGCAGGTCCAGGTGCTCGAGCACCACCCAGAGACTGGGGAGGACCTGGTGGGAATACTGGAAGATTTGCAGCTGGATCGTGGAAAAGCGGGAGAGCAGAAG
Seq A exon
GTAAGGGGTACAGGTGCCCATTTGCAGGAAAGTAAGAAGTGAGCCCCCCAGGTCACACAGGTGGACATGAGCACAGCAGTGGGCGGGGCACTGCTCACTGCTGGTCGGTGTCAGCCTCTACTCACCCTTGCCATTGCTACCCCAGGTGAGGCTGAAGTGTGCGGATATTCTCCATTCTGCCTCTTAGCCTCTTTAAAGGTTCTATGTTCTCTTTTCTGACATTGAAGTGTTTTCTTTAATCAGTTTCCTAATTATCTGTACTTATCTCTAG
Seq C2 exon
GACTCAGCCCAAAGAACCAGACCGACTGTGCTGGTTGGAGAGCCAGCCCCTCATAGAGAAGCACAGGAGCAACCGGGGTTTGTGGTTCTGAAGCCTGAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053518:ENSRNOT00000080047:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.142 A=NA C2=0.972
Domain overlap (PFAM):
C1:
PF0202312=SCAN=WD(100=90.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCCATTGTGCAAACAGT
R:
GGTCTGGTTCTTTGGGCTGAG
Band lengths:
304-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]