RnoEX0102305 @ rn6
Exon Skipping
Gene
ENSRNOG00000053518 | Zscan26
Description
zinc finger and SCAN domain containing 26 [Source:RGD Symbol;Acc:727885]
Coordinates
chr17:45200014-45201705:+
Coord C1 exon
chr17:45200014-45200087
Coord A exon
chr17:45200194-45200253
Coord C2 exon
chr17:45201600-45201705
Length
60 bp
Sequences
Splice sites
3' ss Seq
CCACACATACCTCTTCCCAGATC
3' ss Score
5.89
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GAGTCTCTCAGGATACAGTCAAAAGAAAGGTCTCCAAAACAAAGTGCCTGAAGCAAGGGATGGCACTGGCCTTG
Seq A exon
ATCCACCCTAACAAGCGTGCATACTCTTTGGCTCCCCTGAATCTGAAGGAGGAGCTTCAG
Seq C2 exon
GACTCAGCCCAAAGAACCAGACCGACTGTGCTGGTTGGAGAGCCAGCCCCTCATAGAGAAGCACAGGAGCAACCGGGGTTTGTGGTTCTGAAGCCTGAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053518_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.972
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCTCCAAAACAAAGTGCCT
R:
TCCTCAGGCTTCAGAACCACA
Band lengths:
148-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]