RnoINT0169489 @ rn6
Intron Retention
Gene
ENSRNOG00000053518 | Zscan26
Description
zinc finger and SCAN domain containing 26 [Source:RGD Symbol;Acc:727885]
Coordinates
chr17:45200194-45201328:+
Coord C1 exon
chr17:45200194-45200253
Coord A exon
chr17:45200254-45201010
Coord C2 exon
chr17:45201011-45201328
Length
757 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
ACTACTGTGCTTGGGAACAGGGA
3' ss Score
5.17
Exon sequences
Seq C1 exon
ATCCACCCTAACAAGCGTGCATACTCTTTGGCTCCCCTGAATCTGAAGGAGGAGCTTCAG
Seq A exon
GTAATGAGAGAATCACTATTGTTCATGGTATCAGAGGTCTGGCCTTGGGGAGGGGATCCTAACAGACTAAATTTAGTGACTTGTCACTCAGTCCAATGAGAGAGATGTGTGGTAGTGAAACAAGATAAGAACCAGTTACTTAGCAAATCCATATTGGGAAGAAGCAGGAAGACAGTGTCCTTAGCCCTGTCTTCAGTGCCCTGACTCAGAGTTAAATGGAGAAAGGACAAATGCTGAGAGGAGAGAGAGCACATAACAGTCCTTGTCGATCTGTCTTGGACAAACTGACCAGTCATTTCATGCTGGGTCTGTAAGGTCCTAATACCTCCAGAAAAGTTACTATTGCCGAGGCAGCCAATGCTGGTTAGTGGACACTATCATGGGTGATCTGTCTGCAGAGTTCTTAGTGTCTTGAAAATAACTTATTCTTATCTTGGTGACATTAGCCTTAAAAGGGGACTAGAAGCTATGTGTGGTAGTATAGGACTTTAATCTCAAATTCCAGGCCAGTCAGTACCACATAGTACTAAGAGCCTGTCTTAAAAGATAAAAAAACAAAAGAATGGGACTACTAGCAAGGGTATAGAAATTAGGAGCTGTCAACTTTTGTTCTCCAATTGTGGAAGAGACATTTCTTATCTGTGCAGAGATGAGTAGAAATACGACTCACAGCTTAAGATAGCAAAAGAGATAGATACAGTTGTAGATCCAAGTATGTGCTATAAGCCACTGTTAAAACTACTGTGCTTGGGAACAG
Seq C2 exon
GGATTCAAAGTTCAAGGGGACAGAAAAGGCGTTGGGCAGGAGCCATTGTGCAAACAGTTCAGGCAGCTGCGCTATGAGGAAAGCACTGGACCTCGAGAGGTTTTACGCCGACTCAGGGAGCTCTGCAGACAGTGGCTGCGGCCTGAGACCCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTACTGGAGCAGTTCTTGACCATCCTGCCAAGAGATCTGCAGGTCCAGGTGCTCGAGCACCACCCAGAGACTGGGGAGGACCTGGTGGGAATACTGGAAGATTTGCAGCTGGATCGTGGAAAAGCGGGAGAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053518:ENSRNOT00000080047:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.142
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0202312=SCAN=WD(100=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTGCATACTCTTTGGCTC
R:
TCCACGATCCAGCTGCAAATC
Band lengths:
347-1104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]