MmuINT1035902 @ mm10
Intron Retention
Gene
ENSMUSG00000022228 | Zscan26
Description
zinc finger and SCAN domain containing 26 [Source:MGI Symbol;Acc:MGI:3531417]
Coordinates
chr13:21448167-21449333:-
Coord C1 exon
chr13:21449274-21449333
Coord A exon
chr13:21448485-21449273
Coord C2 exon
chr13:21448167-21448484
Length
789 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
ACTACTGTGCTTGGGAACAGGGA
3' ss Score
5.17
Exon sequences
Seq C1 exon
ATCCACCCTAGCAAGCGTGCATACTCTTTGGCTCCCCTGAATCTGAAGGAGGAGCTTCAG
Seq A exon
GTAATGAGAGAACCACTGTTGTTCATGGTGTCAGAGGTCTGGCCTGGGGGGGTCCTAACAGACTAAATTTAGCGACTTGTCGCTCAGTCCAATGAGAGAGACGATTGGTAGTGAAGCAAGATAAGAATCAGTTATTTAGCAAGTCCATGTTGGGAAGAAACAGGAAAACAGTGCCCTGACTCAGAATTAAATGGGGGAAAGGACAAGAGCCGAGGTGAAGGGGAGCAAATAGCAGTCCTTGTCAGTCTGTCTTGGACAGACTGGTCAGTCAGTATTTCGTGCTGGTTCTGTAAAGTCCTGATCCCTCCAGCAAAGTCATTACTGCTGAGGCAGCCAGTGCTGGCCAGTGGATCCCATTATGGGTGATCTGTCTGCAGAGTTCTTGGGGTCATGAAAATAACTTATTCTTATCTTGGTGACATTAGCCTTAAAAGGGAACTAGAAGCTGTGTGTAGTGGTATAGGACTTTAATCCCAGCACTCAGTAACAGGTAGATCTCTGTGAGGCCAGCTTGGTATATTTGGTACCAAGTTCCAGGCCAGTTACAGCCACATAGTAAGAGCCTGTCTCAAAAGAAAAGAGGAGTGGGGCTACTAGCAAGGCTAGGGAAATTAGGGACTATCAAGCTTTGTTCGCCAGTTGTCAGAGAGACAGTTCTTGAATGATTAGGATATATGTGCAGAGTTGAGTAGAAATCTGACTTTAAAGTTTAAGGTAGCTAAGGAGACATAGTTGTAGATCCAAGTCTGTGCTTTAAGCCACTGTTAAAACTACTGTGCTTGGGAACAG
Seq C2 exon
GGATTCAAAGTTCAAGGGGACAGAAAAGGCGTTGGGCAGGAGCCATTGTGCAAACAGTTCAGGCAGCTGCGCTATGAGGAAAGCACTGGACCTCGAGAGGTTTTACGCCGGCTCAGGGAGCTCTGCAGACAGTGGCTGCGGCCTGAGACCCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTACTGGAGCAGTTCCTGACCATCCTGCCAAGAGATCTGCAGGTCCAGGTGCTCGAGCACCACCCAGAGACTGGGGAGGAACTGGTGGGAATACTGGAAGATTTGCAGCTGGACCGTGGAAAAGCAGGAGAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022228:ENSMUST00000110485:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.217
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0202312=SCAN=WD(100=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCATACTCTTTGGCTCCCC
R:
CTCTCCTGCTTTTCCACGGTC
Band lengths:
356-1145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types