MmuEX0053075 @ mm10
Exon Skipping
Gene
ENSMUSG00000022228 | Zscan26
Description
zinc finger and SCAN domain containing 26 [Source:MGI Symbol;Acc:MGI:3531417]
Coordinates
chr13:21447786-21449516:-
Coord C1 exon
chr13:21449441-21449516
Coord A exon
chr13:21448167-21448484
Coord C2 exon
chr13:21447786-21447894
Length
318 bp
Sequences
Splice sites
3' ss Seq
ACTACTGTGCTTGGGAACAGGGA
3' ss Score
5.17
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAGTGTCTCTCAGGATACAGTCAAGAGAAAAGTCTCCAAAACAGAGTGCCTGAAGCAAGGGATGGCACTGGCCTTG
Seq A exon
GGATTCAAAGTTCAAGGGGACAGAAAAGGCGTTGGGCAGGAGCCATTGTGCAAACAGTTCAGGCAGCTGCGCTATGAGGAAAGCACTGGACCTCGAGAGGTTTTACGCCGGCTCAGGGAGCTCTGCAGACAGTGGCTGCGGCCTGAGACCCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTACTGGAGCAGTTCCTGACCATCCTGCCAAGAGATCTGCAGGTCCAGGTGCTCGAGCACCACCCAGAGACTGGGGAGGAACTGGTGGGAATACTGGAAGATTTGCAGCTGGACCGTGGAAAAGCAGGAGAGCAGAAG
Seq C2 exon
GACTCAGCCCAAAGAAGCAGACCAACGGTGCTGGTTGGCGAGCCAGCCCCTCGCAGGGAAGCACGGGAGCAGCCTGGGTGTGCGCTTCCTCAGAAGCCTGAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022228_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.500 A=0.217 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0202312=SCAN=WD(100=90.6)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTCTCTCAGGATACAGTCA
R:
CTCTCTCCTCAGGCTTCTGA
Band lengths:
185-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types